BLASTX nr result
ID: Coptis25_contig00044210
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00044210 (491 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CCH50966.1| T4.5 [Malus x robusta] 156 2e-38 gb|ABF95666.1| retrotransposon protein, putative, Ty1-copia subc... 139 7e-37 gb|AAX95823.1| retrotransposon protein, putative, unclassified [... 132 4e-35 gb|ACA61613.1| hypothetical protein AP2_E11.1 [Arabidopsis lyrat... 128 7e-35 gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp... 132 1e-34 >emb|CCH50966.1| T4.5 [Malus x robusta] Length = 1670 Score = 156 bits (394), Expect(2) = 2e-38 Identities = 80/128 (62%), Positives = 96/128 (75%), Gaps = 1/128 (0%) Frame = +2 Query: 62 GDLHYFLGIEVKRDSQEMMLTQTMYALDLLKRAHMEDSKPCLTPCLTSQKFDLHSGDLLS 241 GD++YFLGIEV + Q ++L Q YALDLLK+ M +KPC TP TS K D HSG LLS Sbjct: 1372 GDINYFLGIEVHKSDQGLLLHQAKYALDLLKKTDMLGAKPCATPVSTS-KLD-HSGTLLS 1429 Query: 242 DPTEYRSLVGGLQYLSWTRPDLSFAVNQICHFMHQPRTSHLVAVKRILRYLKGTL-MGFI 418 DPT YRS VG LQYL+WTRPDL+FAVNQ+C +MH P+T HL AVKRILRYLKGT+ +G Sbjct: 1430 DPTSYRSTVGALQYLTWTRPDLAFAVNQVCQYMHSPQTIHLQAVKRILRYLKGTVDLGLW 1489 Query: 419 YKKDHKLL 442 + K + L Sbjct: 1490 FTKGSQCL 1497 Score = 28.1 bits (61), Expect(2) = 2e-38 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +1 Query: 7 CNTLIKQLSAIFPMKDLG 60 C ++I QL +FP+KDLG Sbjct: 1355 CQSIISQLQTMFPVKDLG 1372 >gb|ABF95666.1| retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa Japonica Group] Length = 976 Score = 139 bits (349), Expect(2) = 7e-37 Identities = 66/115 (57%), Positives = 84/115 (73%) Frame = +2 Query: 62 GDLHYFLGIEVKRDSQEMMLTQTMYALDLLKRAHMEDSKPCLTPCLTSQKFDLHSGDLLS 241 G L++FLGI V S ++LTQ Y L++L+RA M D KPCLTP TS KF +S Sbjct: 686 GPLNHFLGINVTPHSGGLLLTQRQYCLEILERAGMSDCKPCLTPVDTSAKFSTEGSPSVS 745 Query: 242 DPTEYRSLVGGLQYLSWTRPDLSFAVNQICHFMHQPRTSHLVAVKRILRYLKGTL 406 DPT++RSL G LQYL++TRPD+S+AV Q+C MH PR SHL A+KRILRY++GTL Sbjct: 746 DPTDFRSLAGALQYLTFTRPDISYAVQQVCLHMHDPRESHLTALKRILRYIRGTL 800 Score = 40.0 bits (92), Expect(2) = 7e-37 Identities = 16/29 (55%), Positives = 23/29 (79%), Gaps = 1/29 (3%) Frame = +1 Query: 406 YGIHLQKGSQ-TITAYSDADWAGCPFSRR 489 YG+H+Q+ S + AYSDA+WAGCP +R+ Sbjct: 802 YGLHIQRSSSFDLMAYSDANWAGCPDTRK 830 >gb|AAX95823.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] gi|77550348|gb|ABA93145.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 197 Score = 132 bits (333), Expect(2) = 4e-35 Identities = 62/115 (53%), Positives = 82/115 (71%) Frame = +2 Query: 62 GDLHYFLGIEVKRDSQEMMLTQTMYALDLLKRAHMEDSKPCLTPCLTSQKFDLHSGDLLS 241 G LH+FLGI V+RD + L++ Y L++L+RA M + KPC TP T K G ++ Sbjct: 38 GPLHHFLGISVRRDLSGLFLSKRQYCLEILERAGMLECKPCSTPVDTCSKMSSSDGSPVA 97 Query: 242 DPTEYRSLVGGLQYLSWTRPDLSFAVNQICHFMHQPRTSHLVAVKRILRYLKGTL 406 DPT+YRSL G LQYL++TRPD+S+AV Q+C MH PR HL A+KRILRY++GTL Sbjct: 98 DPTDYRSLAGVLQYLTFTRPDISYAVQQVCLHMHDPREPHLAALKRILRYIRGTL 152 Score = 40.4 bits (93), Expect(2) = 4e-35 Identities = 16/28 (57%), Positives = 23/28 (82%), Gaps = 1/28 (3%) Frame = +1 Query: 409 GIHLQKGSQT-ITAYSDADWAGCPFSRR 489 G+H+Q+ +Q + AYSDADWAGCP +R+ Sbjct: 155 GLHIQRSAQLDLVAYSDADWAGCPDTRK 182 >gb|ACA61613.1| hypothetical protein AP2_E11.1 [Arabidopsis lyrata subsp. petraea] Length = 471 Score = 128 bits (322), Expect(2) = 7e-35 Identities = 57/115 (49%), Positives = 86/115 (74%) Frame = +2 Query: 62 GDLHYFLGIEVKRDSQEMMLTQTMYALDLLKRAHMEDSKPCLTPCLTSQKFDLHSGDLLS 241 G LH+FLG++ +++ + L+Q++YA ++++RA MED KP TP K + G+L+ Sbjct: 181 GKLHHFLGVKADFNTKGLFLSQSVYAQEIIQRAGMEDCKPLATPVDLQSKLSVDDGELIE 240 Query: 242 DPTEYRSLVGGLQYLSWTRPDLSFAVNQICHFMHQPRTSHLVAVKRILRYLKGTL 406 +PT YR L G LQYL++TRPD+S+AV+Q+C +MH+PR HL A+KRI+RYL+GTL Sbjct: 241 NPTFYRRLAGALQYLTFTRPDISYAVHQVCLYMHKPRVPHLQALKRIIRYLQGTL 295 Score = 43.9 bits (102), Expect(2) = 7e-35 Identities = 19/30 (63%), Positives = 24/30 (80%), Gaps = 1/30 (3%) Frame = +1 Query: 403 TYGIHLQKGS-QTITAYSDADWAGCPFSRR 489 +YGI + +G T+TAYSDADWAGCP +RR Sbjct: 296 SYGIQMTRGRIDTLTAYSDADWAGCPDTRR 325 >gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata] Length = 1296 Score = 132 bits (332), Expect(2) = 1e-34 Identities = 65/115 (56%), Positives = 80/115 (69%) Frame = +2 Query: 62 GDLHYFLGIEVKRDSQEMMLTQTMYALDLLKRAHMEDSKPCLTPCLTSQKFDLHSGDLLS 241 G LH+FLGI V+RD + L Q YA D+L RA+M + PCLTP QK ++ Sbjct: 1020 GPLHHFLGITVQRDKSSLFLHQHNYAADILHRANMTNCNPCLTPVDMKQKLAADGSPPVA 1079 Query: 242 DPTEYRSLVGGLQYLSWTRPDLSFAVNQICHFMHQPRTSHLVAVKRILRYLKGTL 406 DPT YRSL G LQYL++TRPD+SFAV QIC FMH PR +HL A+K ILRY+KGT+ Sbjct: 1080 DPTFYRSLAGALQYLTFTRPDISFAVQQICLFMHDPREAHLNALKIILRYIKGTI 1134 Score = 39.3 bits (90), Expect(2) = 1e-34 Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 1/30 (3%) Frame = +1 Query: 403 TYGIHLQKGSQ-TITAYSDADWAGCPFSRR 489 ++GIH+ K + +T YSDADWAGCP RR Sbjct: 1135 SHGIHMTKPTSFELTTYSDADWAGCPCIRR 1164