BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00044210
         (491 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                156   2e-38
gb|ABF95666.1| retrotransposon protein, putative, Ty1-copia subc...   139   7e-37
gb|AAX95823.1| retrotransposon protein, putative, unclassified [...   132   4e-35
gb|ACA61613.1| hypothetical protein AP2_E11.1 [Arabidopsis lyrat...   128   7e-35
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp...   132   1e-34

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  156 bits (394), Expect(2) = 2e-38
 Identities = 80/128 (62%), Positives = 96/128 (75%), Gaps = 1/128 (0%)
 Frame = +2

Query: 62   GDLHYFLGIEVKRDSQEMMLTQTMYALDLLKRAHMEDSKPCLTPCLTSQKFDLHSGDLLS 241
            GD++YFLGIEV +  Q ++L Q  YALDLLK+  M  +KPC TP  TS K D HSG LLS
Sbjct: 1372 GDINYFLGIEVHKSDQGLLLHQAKYALDLLKKTDMLGAKPCATPVSTS-KLD-HSGTLLS 1429

Query: 242  DPTEYRSLVGGLQYLSWTRPDLSFAVNQICHFMHQPRTSHLVAVKRILRYLKGTL-MGFI 418
            DPT YRS VG LQYL+WTRPDL+FAVNQ+C +MH P+T HL AVKRILRYLKGT+ +G  
Sbjct: 1430 DPTSYRSTVGALQYLTWTRPDLAFAVNQVCQYMHSPQTIHLQAVKRILRYLKGTVDLGLW 1489

Query: 419  YKKDHKLL 442
            + K  + L
Sbjct: 1490 FTKGSQCL 1497



 Score = 28.1 bits (61), Expect(2) = 2e-38
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 7    CNTLIKQLSAIFPMKDLG 60
            C ++I QL  +FP+KDLG
Sbjct: 1355 CQSIISQLQTMFPVKDLG 1372


>gb|ABF95666.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
            [Oryza sativa Japonica Group]
          Length = 976

 Score =  139 bits (349), Expect(2) = 7e-37
 Identities = 66/115 (57%), Positives = 84/115 (73%)
 Frame = +2

Query: 62   GDLHYFLGIEVKRDSQEMMLTQTMYALDLLKRAHMEDSKPCLTPCLTSQKFDLHSGDLLS 241
            G L++FLGI V   S  ++LTQ  Y L++L+RA M D KPCLTP  TS KF       +S
Sbjct: 686  GPLNHFLGINVTPHSGGLLLTQRQYCLEILERAGMSDCKPCLTPVDTSAKFSTEGSPSVS 745

Query: 242  DPTEYRSLVGGLQYLSWTRPDLSFAVNQICHFMHQPRTSHLVAVKRILRYLKGTL 406
            DPT++RSL G LQYL++TRPD+S+AV Q+C  MH PR SHL A+KRILRY++GTL
Sbjct: 746  DPTDFRSLAGALQYLTFTRPDISYAVQQVCLHMHDPRESHLTALKRILRYIRGTL 800



 Score = 40.0 bits (92), Expect(2) = 7e-37
 Identities = 16/29 (55%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
 Frame = +1

Query: 406 YGIHLQKGSQ-TITAYSDADWAGCPFSRR 489
           YG+H+Q+ S   + AYSDA+WAGCP +R+
Sbjct: 802 YGLHIQRSSSFDLMAYSDANWAGCPDTRK 830


>gb|AAX95823.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|77550348|gb|ABA93145.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group]
          Length = 197

 Score =  132 bits (333), Expect(2) = 4e-35
 Identities = 62/115 (53%), Positives = 82/115 (71%)
 Frame = +2

Query: 62  GDLHYFLGIEVKRDSQEMMLTQTMYALDLLKRAHMEDSKPCLTPCLTSQKFDLHSGDLLS 241
           G LH+FLGI V+RD   + L++  Y L++L+RA M + KPC TP  T  K     G  ++
Sbjct: 38  GPLHHFLGISVRRDLSGLFLSKRQYCLEILERAGMLECKPCSTPVDTCSKMSSSDGSPVA 97

Query: 242 DPTEYRSLVGGLQYLSWTRPDLSFAVNQICHFMHQPRTSHLVAVKRILRYLKGTL 406
           DPT+YRSL G LQYL++TRPD+S+AV Q+C  MH PR  HL A+KRILRY++GTL
Sbjct: 98  DPTDYRSLAGVLQYLTFTRPDISYAVQQVCLHMHDPREPHLAALKRILRYIRGTL 152



 Score = 40.4 bits (93), Expect(2) = 4e-35
 Identities = 16/28 (57%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
 Frame = +1

Query: 409 GIHLQKGSQT-ITAYSDADWAGCPFSRR 489
           G+H+Q+ +Q  + AYSDADWAGCP +R+
Sbjct: 155 GLHIQRSAQLDLVAYSDADWAGCPDTRK 182


>gb|ACA61613.1| hypothetical protein AP2_E11.1 [Arabidopsis lyrata subsp. petraea]
          Length = 471

 Score =  128 bits (322), Expect(2) = 7e-35
 Identities = 57/115 (49%), Positives = 86/115 (74%)
 Frame = +2

Query: 62  GDLHYFLGIEVKRDSQEMMLTQTMYALDLLKRAHMEDSKPCLTPCLTSQKFDLHSGDLLS 241
           G LH+FLG++   +++ + L+Q++YA ++++RA MED KP  TP     K  +  G+L+ 
Sbjct: 181 GKLHHFLGVKADFNTKGLFLSQSVYAQEIIQRAGMEDCKPLATPVDLQSKLSVDDGELIE 240

Query: 242 DPTEYRSLVGGLQYLSWTRPDLSFAVNQICHFMHQPRTSHLVAVKRILRYLKGTL 406
           +PT YR L G LQYL++TRPD+S+AV+Q+C +MH+PR  HL A+KRI+RYL+GTL
Sbjct: 241 NPTFYRRLAGALQYLTFTRPDISYAVHQVCLYMHKPRVPHLQALKRIIRYLQGTL 295



 Score = 43.9 bits (102), Expect(2) = 7e-35
 Identities = 19/30 (63%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
 Frame = +1

Query: 403 TYGIHLQKGS-QTITAYSDADWAGCPFSRR 489
           +YGI + +G   T+TAYSDADWAGCP +RR
Sbjct: 296 SYGIQMTRGRIDTLTAYSDADWAGCPDTRR 325


>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1296

 Score =  132 bits (332), Expect(2) = 1e-34
 Identities = 65/115 (56%), Positives = 80/115 (69%)
 Frame = +2

Query: 62   GDLHYFLGIEVKRDSQEMMLTQTMYALDLLKRAHMEDSKPCLTPCLTSQKFDLHSGDLLS 241
            G LH+FLGI V+RD   + L Q  YA D+L RA+M +  PCLTP    QK        ++
Sbjct: 1020 GPLHHFLGITVQRDKSSLFLHQHNYAADILHRANMTNCNPCLTPVDMKQKLAADGSPPVA 1079

Query: 242  DPTEYRSLVGGLQYLSWTRPDLSFAVNQICHFMHQPRTSHLVAVKRILRYLKGTL 406
            DPT YRSL G LQYL++TRPD+SFAV QIC FMH PR +HL A+K ILRY+KGT+
Sbjct: 1080 DPTFYRSLAGALQYLTFTRPDISFAVQQICLFMHDPREAHLNALKIILRYIKGTI 1134



 Score = 39.3 bits (90), Expect(2) = 1e-34
 Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +1

Query: 403  TYGIHLQKGSQ-TITAYSDADWAGCPFSRR 489
            ++GIH+ K +   +T YSDADWAGCP  RR
Sbjct: 1135 SHGIHMTKPTSFELTTYSDADWAGCPCIRR 1164