BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00044209
         (279 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15973.3| unnamed protein product [Vitis vinifera]               66   3e-09
ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containi...    66   3e-09
emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]    66   3e-09
ref|XP_002525630.1| pentatricopeptide repeat-containing protein,...    65   6e-09
ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|2...    65   7e-09

>emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
 Frame = +1

Query: 4   TFPSMKIITTPVVNKLR----KFVPQNPLLSLLDTCKNMKQLKQIHAQIITQESFFSPYE 171
           + P    + TP  N +     ++   +P LSL+D C   KQLKQIHAQ++    FF P+ 
Sbjct: 10  SLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPF- 68

Query: 172 SRSATTKLISFLALSGHGNLDYAKTVFSQVQNPDIF 279
              + ++LI+  ALS   +LDYA+ VF Q+ +P+++
Sbjct: 69  ---SASRLITAAALSPFPSLDYAQQVFDQIPHPNLY 101


>ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
 Frame = +1

Query: 4   TFPSMKIITTPVVNKLR----KFVPQNPLLSLLDTCKNMKQLKQIHAQIITQESFFSPYE 171
           + P    + TP  N +     ++   +P LSL+D C   KQLKQIHAQ++    FF P+ 
Sbjct: 10  SLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPF- 68

Query: 172 SRSATTKLISFLALSGHGNLDYAKTVFSQVQNPDIF 279
              + ++LI+  ALS   +LDYA+ VF Q+ +P+++
Sbjct: 69  ---SASRLITAAALSPFPSLDYAQQVFDQIPHPNLY 101


>emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
 Frame = +1

Query: 4   TFPSMKIITTPVVNKLR----KFVPQNPLLSLLDTCKNMKQLKQIHAQIITQESFFSPYE 171
           + P    + TP  N +     ++   +P LSL+D C   KQLKQIHAQ++    FF P+ 
Sbjct: 10  SLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPF- 68

Query: 172 SRSATTKLISFLALSGHGNLDYAKTVFSQVQNPDIF 279
              + ++LI+  ALS   +LDYA+ VF Q+ +P+++
Sbjct: 69  ---SASRLITAAALSPFPSLDYAQQVFDQIPHPNLY 101


>ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535066|gb|EEF36748.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 765

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 34/90 (37%), Positives = 51/90 (56%)
 Frame = +1

Query: 10  PSMKIITTPVVNKLRKFVPQNPLLSLLDTCKNMKQLKQIHAQIITQESFFSPYESRSATT 189
           P+  I+T P     R     +  LSL+D C N+K LK++HA I+    FF PY +    +
Sbjct: 15  PNHSILTVP---NGRPVTSHSQTLSLIDQCTNLKHLKELHATILRSGLFFHPYNA----S 67

Query: 190 KLISFLALSGHGNLDYAKTVFSQVQNPDIF 279
           KL S  ALS   +LDYA+ VF ++  P+++
Sbjct: 68  KLFSVAALSSFSSLDYARKVFEEISQPNLY 97


>ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|222846489|gb|EEE84036.1|
           predicted protein [Populus trichocarpa]
          Length = 668

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 34/79 (43%), Positives = 48/79 (60%)
 Frame = +1

Query: 43  NKLRKFVPQNPLLSLLDTCKNMKQLKQIHAQIITQESFFSPYESRSATTKLISFLALSGH 222
           N    +V  NPLLSLL+ CK+  QLKQI AQ+I        +    A+++LISF A+S  
Sbjct: 45  NTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGF----ASSRLISFCAISES 100

Query: 223 GNLDYAKTVFSQVQNPDIF 279
            NLDY   + + +QNP++F
Sbjct: 101 RNLDYCIKILNNLQNPNVF 119