BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00044180
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containi...   135   3e-30
emb|CBI16904.3| unnamed protein product [Vitis vinifera]              135   3e-30
emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]   135   3e-30
ref|XP_002331286.1| predicted protein [Populus trichocarpa] gi|2...   132   4e-29
ref|XP_002884315.1| pentatricopeptide repeat-containing protein ...   131   5e-29

>ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  135 bits (340), Expect = 3e-30
 Identities = 64/121 (52%), Positives = 89/121 (73%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L +CA+L TVE GKQIHAQIIK +  ++SD +++S LV+MYSKCG + + +LIF+K P R
Sbjct: 585 LDTCANLVTVELGKQIHAQIIKKE--LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNR 642

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACSYRGLVEEGYRY 16
           D   WNAM+ G AQHG  E A+++F+  + + N++PNH TF+ VL AC + GLVE+G  Y
Sbjct: 643 DFVTWNAMVCGYAQHGLGEEALKIFE-YMQLENVKPNHATFLAVLRACGHMGLVEKGLHY 701

Query: 15  F 13
           F
Sbjct: 702 F 702



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 40/117 (34%), Positives = 68/117 (58%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L +CA    +  G +IH +IIKS   +  D FV   L++MYSKCG + +A+ + D++ E+
Sbjct: 484 LKACAGWQALNCGMEIHNRIIKSRLGL--DSFVGIALIDMYSKCGMMEKAEKLHDRLAEQ 541

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACSYRGLVEEG 25
            + +WNA+I+G +    +E A + F  +L M  + P++ T+  +L  C+    VE G
Sbjct: 542 TVVSWNAIISGFSLQKQSEEAQKTFSKMLEM-GVDPDNFTYATILDTCANLVTVELG 597



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 37/107 (34%), Positives = 64/107 (59%)
 Frame = -2

Query: 369 SCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPERDL 190
           +CA +    EG Q+H   +KS    +S++ V + +++MY KCG + EA L+F++M  RD 
Sbjct: 385 ACAVIKGDLEGLQVHGLSMKS--LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDA 442

Query: 189 PAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACS 49
            +WNA+I    Q+G+ E  + +F  +L    ++P+  T+  VL AC+
Sbjct: 443 VSWNAIIAAHEQNGNEEKTLSLFVWML-QSGMEPDEFTYGSVLKACA 488



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/107 (28%), Positives = 61/107 (57%)
 Frame = -2

Query: 369 SCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPERDL 190
           SCA L+ +  G Q+H   +K+D    +DV + +  ++MY KC  +++A+ +F+ +P  +L
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFG--TDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNL 341

Query: 189 PAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACS 49
            ++NA+I G A+      A+ +F+ LL    +  + ++  G   AC+
Sbjct: 342 QSYNAIIVGYARSDKGIEALGMFR-LLQKSGLGLDEVSLSGAFRACA 387



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/85 (37%), Positives = 50/85 (58%)
 Frame = -2

Query: 366 CASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPERDLP 187
           C+    +  GKQ HA++I ++   K  VFV + L++MY KC  +  A  +FD MP+RD  
Sbjct: 52  CSDRKALCPGKQAHARMILTE--FKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTV 109

Query: 186 AWNAMITGLAQHGHAEMAIEVFQGL 112
           +WNAM+ G A  G   +A ++F  +
Sbjct: 110 SWNAMLFGYAGRGDIGVAQKLFDAM 134



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 33/109 (30%), Positives = 54/109 (49%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L SC+SL     G QIH   +K       DV   S L++MY+KC  +  +   F  MPE+
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKM--GFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK 238

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACS 49
           +  +W+A+I G  Q+      +E+F+  +    +  +  TF  V  +C+
Sbjct: 239 NWVSWSAIIAGCVQNDDLRGGLELFKE-MQKAGVGVSQSTFASVFRSCA 286


>emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  135 bits (340), Expect = 3e-30
 Identities = 64/121 (52%), Positives = 89/121 (73%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L +CA+L TVE GKQIHAQIIK +  ++SD +++S LV+MYSKCG + + +LIF+K P R
Sbjct: 538 LDTCANLVTVELGKQIHAQIIKKE--LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNR 595

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACSYRGLVEEGYRY 16
           D   WNAM+ G AQHG  E A+++F+  + + N++PNH TF+ VL AC + GLVE+G  Y
Sbjct: 596 DFVTWNAMVCGYAQHGLGEEALKIFE-YMQLENVKPNHATFLAVLRACGHMGLVEKGLHY 654

Query: 15  F 13
           F
Sbjct: 655 F 655



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 36/102 (35%), Positives = 61/102 (59%)
 Frame = -2

Query: 330 IHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPERDLPAWNAMITGLAQH 151
           IH +IIKS   +  D FV   L++MYSKCG + +A+ + D++ E+ + +WNA+I+G +  
Sbjct: 452 IHNRIIKSRLGL--DSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQ 509

Query: 150 GHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACSYRGLVEEG 25
             +E A + F  +L M  + P++ T+  +L  C+    VE G
Sbjct: 510 KQSEEAQKTFSKMLEM-GVDPDNFTYATILDTCANLVTVELG 550



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/85 (37%), Positives = 50/85 (58%)
 Frame = -2

Query: 366 CASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPERDLP 187
           C+    +  GKQ HA++I ++   K  VFV + L++MY KC  +  A  +FD MP+RD  
Sbjct: 52  CSDRKALCPGKQAHARMILTE--FKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTV 109

Query: 186 AWNAMITGLAQHGHAEMAIEVFQGL 112
           +WNAM+ G A  G   +A ++F  +
Sbjct: 110 SWNAMLFGYAGRGDIGVAQKLFDAM 134



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/83 (36%), Positives = 51/83 (61%)
 Frame = -2

Query: 369 SCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPERDL 190
           +CA +    EG Q+H   +KS    +S++ V + +++MY KCG + EA L+F++M  RD 
Sbjct: 371 ACAVIKGDLEGLQVHGLSMKS--LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDA 428

Query: 189 PAWNAMITGLAQHGHAEMAIEVF 121
            +WNA+I    Q+G+ E  + +F
Sbjct: 429 VSWNAIIAAHEQNGNEEKTLSLF 451



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 46/72 (63%)
 Frame = -2

Query: 369 SCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPERDL 190
           SCA L+ +  G Q+H   +K+D    +DV + +  ++MY KC  +++A+ +F+ +P  +L
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFG--TDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNL 341

Query: 189 PAWNAMITGLAQ 154
            ++NA+I G A+
Sbjct: 342 QSYNAIIVGYAR 353



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 33/109 (30%), Positives = 54/109 (49%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L SC+SL     G QIH   +K       DV   S L++MY+KC  +  +   F  MPE+
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKM--GFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK 238

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACS 49
           +  +W+A+I G  Q+      +E+F+  +    +  +  TF  V  +C+
Sbjct: 239 NWVSWSAIIAGCVQNDDLRGGLELFKE-MQKAGVGVSQSTFASVFRSCA 286


>emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  135 bits (340), Expect = 3e-30
 Identities = 64/121 (52%), Positives = 89/121 (73%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L +CA+L TVE GKQIHAQIIK +  ++SD +++S LV+MYSKCG + + +LIF+K P R
Sbjct: 522 LDTCANLVTVELGKQIHAQIIKKE--LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNR 579

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACSYRGLVEEGYRY 16
           D   WNAM+ G AQHG  E A+++F+  + + N++PNH TF+ VL AC + GLVE+G  Y
Sbjct: 580 DFVTWNAMVCGYAQHGLGEEALKIFE-YMQLENVKPNHATFLAVLRACGHMGLVEKGLHY 638

Query: 15  F 13
           F
Sbjct: 639 F 639



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 40/117 (34%), Positives = 68/117 (58%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L +CA    +  G +IH +IIKS   +  D FV   L++MYSKCG + +A+ + D++ E+
Sbjct: 421 LKACAGWQALNCGMEIHNRIIKSRMGL--DSFVGIALIDMYSKCGMMEKAEKLHDRLAEQ 478

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACSYRGLVEEG 25
            + +WNA+I+G +    +E A + F  +L M  + P++ T+  +L  C+    VE G
Sbjct: 479 TVVSWNAIISGFSLQKQSEEAQKTFSKMLEM-GVDPDNFTYATILDTCANLVTVELG 534



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 37/107 (34%), Positives = 64/107 (59%)
 Frame = -2

Query: 369 SCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPERDL 190
           +CA +    EG Q+H   +KS    +S++ V + +++MY KCG + EA L+F++M  RD 
Sbjct: 322 ACAVIKGDLEGLQVHGLSMKS--LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDA 379

Query: 189 PAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACS 49
            +WNA+I    Q+G+ E  + +F  +L    ++P+  T+  VL AC+
Sbjct: 380 VSWNAIIAAHEQNGNEEKTLSLFVWML-QSGMEPDEFTYGSVLKACA 425



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/85 (37%), Positives = 50/85 (58%)
 Frame = -2

Query: 366 CASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPERDLP 187
           C+    +  GKQ HA++I ++   K  VFV + L++MY KC  +  A  +FD MP+RD  
Sbjct: 52  CSDRKALCPGKQAHARMILTE--FKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTV 109

Query: 186 AWNAMITGLAQHGHAEMAIEVFQGL 112
           +WNAM+ G A  G   +A ++F  +
Sbjct: 110 SWNAMLFGYAGRGDIGVAQKLFDAM 134


>ref|XP_002331286.1| predicted protein [Populus trichocarpa] gi|222873711|gb|EEF10842.1|
           predicted protein [Populus trichocarpa]
          Length = 897

 Score =  132 bits (331), Expect = 4e-29
 Identities = 63/124 (50%), Positives = 92/124 (74%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L +CA+LATV  GKQIHAQIIK +  ++SDV++ S LV+MYSKCG + +++L+F+K P R
Sbjct: 592 LDTCANLATVGLGKQIHAQIIKQE--LQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNR 649

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACSYRGLVEEGYRY 16
           D   WNAM+ G A HG  E A+++F+  + + N++PNH TFV VL AC++ GLV++G  Y
Sbjct: 650 DFVTWNAMLCGYAHHGLGEEALKLFES-MQLVNVKPNHATFVSVLRACAHMGLVDKGLHY 708

Query: 15  FKLI 4
           F ++
Sbjct: 709 FDVM 712



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 40/117 (34%), Positives = 68/117 (58%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L++CAS+    EG+Q+H   +KS S   S++ V + +++MY KC  + EA  +FD M  R
Sbjct: 390 LNACASIRGDLEGRQVHGLAVKSIS--MSNICVANAILDMYGKCKALAEASDLFDMMERR 447

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACSYRGLVEEG 25
           D  +WNA+I    Q+G+ E  +  F  +++   ++P+  T+  VL AC+ R  +  G
Sbjct: 448 DAVSWNAIIAACEQNGNEEETLAHFASMIH-SRMEPDDFTYGSVLKACAGRQALNTG 503



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 38/109 (34%), Positives = 62/109 (56%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L +CA    +  G +IH +IIKS      D FV + LV+MY KCG + +A  I D+  ++
Sbjct: 491 LKACAGRQALNTGMEIHTRIIKSGMGF--DSFVGAALVDMYCKCGMIEKADKIHDRTEQK 548

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACS 49
            + +WNA+I+G +    +E A + F  +L M  + P++ T+  VL  C+
Sbjct: 549 TMVSWNAIISGFSLLQQSEDAHKFFSRMLEM-GVNPDNFTYAAVLDTCA 596



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 41/114 (35%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
 Frame = -2

Query: 369 SCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPERDL 190
           SCA+L+ +  GK++H+  +KS     SD+ V +  ++MY+KCG + +A+ +   MP+  L
Sbjct: 291 SCAALSALRLGKELHSHALKSAFG--SDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSL 348

Query: 189 PAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSAC-SYRGLVE 31
            ++NA+I G A+      A++ FQ LL    +  + IT  G L+AC S RG +E
Sbjct: 349 QSYNAIIVGYARSDRGFQALKSFQ-LLLKTGLGFDEITLSGALNACASIRGDLE 401



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 26/86 (30%), Positives = 48/86 (55%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L +C +L   + G Q+H  ++K       DV   S L+ MY+KC  + ++  +F ++PE+
Sbjct: 188 LKACGALEECDMGVQVHGLVVKF--GFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEK 245

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQ 118
           +  +W+AMI G  Q+      +E+F+
Sbjct: 246 NWVSWSAMIAGCVQNDRNVEGLELFK 271


>ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330155|gb|EFH60574.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 861

 Score =  131 bits (330), Expect = 5e-29
 Identities = 60/125 (48%), Positives = 94/125 (75%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L +CA+LA+   GKQIHAQ+IK +  ++SDV+++S LV+MYSKCG + +++L+F+K   R
Sbjct: 568 LDTCANLASAGLGKQIHAQVIKKE--LQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRR 625

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACSYRGLVEEGYRY 16
           D   WNAMI G A HG  E AI++F+ ++ + NI+PNH+TF+ +L AC++ GL+++G  Y
Sbjct: 626 DFVTWNAMICGYAHHGKGEEAIQLFERMI-LENIKPNHVTFISILRACAHMGLIDKGLEY 684

Query: 15  FKLIK 1
           F ++K
Sbjct: 685 FYMMK 689



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 41/123 (33%), Positives = 71/123 (57%)
 Frame = -2

Query: 375 LHSCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPER 196
           L SCA+L+ +  G Q+HA  +KSD    +D  V +  ++MY+KC  + +A+++FDK    
Sbjct: 246 LRSCAALSELRLGGQLHAHALKSD--FAADGIVRTATLDMYAKCDNMQDAQILFDKSENL 303

Query: 195 DLPAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACSYRGLVEEGYRY 16
           +  ++NAMITG +Q  H   A+ +F  L++   +  + I+  GV  AC+    + EG + 
Sbjct: 304 NRQSYNAMITGYSQEEHGFKALLLFHRLMS-SGLGFDEISLSGVFRACALVKGLSEGLQI 362

Query: 15  FKL 7
           + L
Sbjct: 363 YDL 365



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 39/107 (36%), Positives = 60/107 (56%)
 Frame = -2

Query: 369 SCASLATVEEGKQIHAQIIKSDSNIKSDVFVNSGLVEMYSKCGYVTEAKLIFDKMPERDL 190
           +CA +  + EG QI+   IKS  ++  DV V +  ++MY KC  + EA  +FD+M  RD 
Sbjct: 349 ACALVKGLSEGLQIYDLAIKSSLSL--DVCVANAAIDMYGKCQALAEAFRVFDEMRRRDA 406

Query: 189 PAWNAMITGLAQHGHAEMAIEVFQGLLNMPNIQPNHITFVGVLSACS 49
            +WNA+I    Q+G     + +F  +L    I+P+  TF  VL AC+
Sbjct: 407 VSWNAIIAAHEQNGKGYETLFLFVSMLR-SRIEPDEFTFGSVLKACT 452