BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00044169
         (318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002892331.1| pentatricopeptide repeat-containing protein ...    79   3e-13
ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containi...    76   3e-12
ref|NP_563765.1| pentatricopeptide repeat-containing protein [Ar...    75   4e-12
ref|XP_002525148.1| pentatricopeptide repeat-containing protein,...    72   5e-11
ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|2...    71   1e-10

>ref|XP_002892331.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338173|gb|EFH68590.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 343

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 34/60 (56%), Positives = 52/60 (86%)
 Frame = -1

Query: 318 VEGCLEKKEFVLGGKMVIQMVEKGFIPYIRVRQRVLDGLASVGKRQSACLVRQKLADVRS 139
           VEGCLE +E++L GKMV++M ++GFIPYI+VRQ+V++ L S+G+ + AC VRQ+L+++RS
Sbjct: 284 VEGCLEVREYILAGKMVMRMTDRGFIPYIKVRQKVVERLISIGEWKLACTVRQRLSELRS 343


>ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06270-like [Glycine max]
          Length = 342

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 33/60 (55%), Positives = 47/60 (78%)
 Frame = -1

Query: 318 VEGCLEKKEFVLGGKMVIQMVEKGFIPYIRVRQRVLDGLASVGKRQSACLVRQKLADVRS 139
           +EGCLEK+E+VL  K+   M E+GFIPYIRVRQ++++GLAS+ +   AC VRQ+ A ++S
Sbjct: 283 IEGCLEKREYVLAAKVATGMTERGFIPYIRVRQKIIEGLASIDEWNLACAVRQRFAALKS 342


>ref|NP_563765.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75264068|sp|Q9LNC0.1|PPR16_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g06270 gi|8844132|gb|AAF80224.1|AC025290_13 Contains
           similarity to an unknown protein F23N19.4 gi|6630464
           from Arabidopsis thaliana gb|AC007190 and contains
           multiple PPR PF|01535 repeats. EST gb|T44174 comes from
           this gene [Arabidopsis thaliana]
           gi|17529194|gb|AAL38823.1| unknown protein [Arabidopsis
           thaliana] gi|20465473|gb|AAM20196.1| unknown protein
           [Arabidopsis thaliana] gi|21536601|gb|AAM60933.1|
           unknown [Arabidopsis thaliana]
           gi|332189849|gb|AEE27970.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 343

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 31/60 (51%), Positives = 52/60 (86%)
 Frame = -1

Query: 318 VEGCLEKKEFVLGGKMVIQMVEKGFIPYIRVRQRVLDGLASVGKRQSACLVRQKLADVRS 139
           VEGCLE +E++L GK+V++M ++GFIPYI+VRQ+V++ L ++G+ + AC VRQ+++++RS
Sbjct: 284 VEGCLEVREYILAGKVVMRMTDRGFIPYIKVRQKVVERLINIGEWKLACTVRQRVSELRS 343


>ref|XP_002525148.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535607|gb|EEF37275.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 354

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 31/60 (51%), Positives = 46/60 (76%)
 Frame = -1

Query: 318 VEGCLEKKEFVLGGKMVIQMVEKGFIPYIRVRQRVLDGLASVGKRQSACLVRQKLADVRS 139
           +EGCLE+KE++L  K+V++M +KGFIPYI+VRQ+V++GL        AC VRQ+ A++ S
Sbjct: 295 LEGCLERKEYILAAKVVMRMTDKGFIPYIKVRQKVVEGLIDADAWNIACTVRQRFAELSS 354


>ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|222872316|gb|EEF09447.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 33/60 (55%), Positives = 45/60 (75%)
 Frame = -1

Query: 318 VEGCLEKKEFVLGGKMVIQMVEKGFIPYIRVRQRVLDGLASVGKRQSACLVRQKLADVRS 139
           VEGCLE K+F L  K+V+ M EKGFIPYI+VRQ+V++GL   G+ + AC VR++ A + S
Sbjct: 282 VEGCLECKDFFLAAKVVMGMTEKGFIPYIKVRQKVVEGLIDAGEWKLACTVRERFAALSS 341