BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00044084
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAE05388.1| OSJNBa0022F16.12 [Oryza sativa Japonica Group]        180   1e-43
gb|ABA98194.1| retrotransposon protein, putative, Ty3-gypsy subc...   179   2e-43
gb|AAK52169.1|AC084831_23 putative polyprotein [Oryza sativa Jap...   179   2e-43
gb|ABF97067.1| retrotransposon protein, putative, Ty3-gypsy subc...   179   2e-43
gb|AAN04923.1| Putative retroelement [Oryza sativa Japonica Group]    179   3e-43

>emb|CAE05388.1| OSJNBa0022F16.12 [Oryza sativa Japonica Group]
          Length = 1138

 Score =  180 bits (456), Expect = 1e-43
 Identities = 79/115 (68%), Positives = 97/115 (84%)
 Frame = -3

Query: 351 YRHFVEGFSSIASFLTRLTQNDVKFEWTEACENAFQELKTRLITAPVLTIPDPEKSYVIY 172
           YR F+E FS IA  +TRL Q DVK++W+E CE +FQELK RLITAP+L +PDP+K + +Y
Sbjct: 441 YRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLITAPILILPDPKKGFQVY 500

Query: 171 TDASNTGLGCVLMQEGQVIAYASRQLNAHEKNYPTHDLELAAIIHALKIWRHYVY 7
            DAS  GLGCVLMQ+G+V+AYASRQL  HEKNYPTHDLELAA++HALKIWRHY++
Sbjct: 501 CDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLF 555


>gb|ABA98194.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1375

 Score =  179 bits (455), Expect = 2e-43
 Identities = 77/115 (66%), Positives = 98/115 (85%)
 Frame = -3

Query: 351  YRHFVEGFSSIASFLTRLTQNDVKFEWTEACENAFQELKTRLITAPVLTIPDPEKSYVIY 172
            YR F+E FS IA  +TRL Q DVK++W+E CE +FQELK RL++AP+LT+PDP+K + +Y
Sbjct: 678  YRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLVSAPILTLPDPKKGFQVY 737

Query: 171  TDASNTGLGCVLMQEGQVIAYASRQLNAHEKNYPTHDLELAAIIHALKIWRHYVY 7
             DAS  GLGCVLMQ+G+V+AYASRQL  HEKNYPTHD+ELAA++HALKIWRHY++
Sbjct: 738  CDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWRHYLF 792


>gb|AAK52169.1|AC084831_23 putative polyprotein [Oryza sativa Japonica Group]
            gi|24796793|gb|AAN64470.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1473

 Score =  179 bits (454), Expect = 2e-43
 Identities = 78/115 (67%), Positives = 97/115 (84%)
 Frame = -3

Query: 351  YRHFVEGFSSIASFLTRLTQNDVKFEWTEACENAFQELKTRLITAPVLTIPDPEKSYVIY 172
            YR F+E FS IA  +TRL Q DVK++W+E CE +FQELK RLI+AP+L +PDP+K + +Y
Sbjct: 902  YRRFIENFSKIAKSMTRLLQKDVKYKWSEECEQSFQELKNRLISAPILILPDPKKGFQVY 961

Query: 171  TDASNTGLGCVLMQEGQVIAYASRQLNAHEKNYPTHDLELAAIIHALKIWRHYVY 7
             DAS  GLGCVLMQ+G+V+AYASRQL  HEKNYPTHDLELAA++HALKIWRHY++
Sbjct: 962  CDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLF 1016


>gb|ABF97067.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1475

 Score =  179 bits (454), Expect = 2e-43
 Identities = 78/115 (67%), Positives = 97/115 (84%)
 Frame = -3

Query: 351  YRHFVEGFSSIASFLTRLTQNDVKFEWTEACENAFQELKTRLITAPVLTIPDPEKSYVIY 172
            YR F+E FS IA  +TRL Q DVK++W+E CE +FQELK RLI+AP+L +PDP+K + +Y
Sbjct: 904  YRRFIENFSKIAKSMTRLLQKDVKYKWSEECEQSFQELKNRLISAPILILPDPKKGFQVY 963

Query: 171  TDASNTGLGCVLMQEGQVIAYASRQLNAHEKNYPTHDLELAAIIHALKIWRHYVY 7
             DAS  GLGCVLMQ+G+V+AYASRQL  HEKNYPTHDLELAA++HALKIWRHY++
Sbjct: 964  CDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLF 1018


>gb|AAN04923.1| Putative retroelement [Oryza sativa Japonica Group]
          Length = 1729

 Score =  179 bits (453), Expect = 3e-43
 Identities = 78/115 (67%), Positives = 98/115 (85%)
 Frame = -3

Query: 351  YRHFVEGFSSIASFLTRLTQNDVKFEWTEACENAFQELKTRLITAPVLTIPDPEKSYVIY 172
            YR F+E FS IA  +TRL Q DVK++W+E CE +FQELK+RLI+AP+L +PDP+K + +Y
Sbjct: 1097 YRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPILILPDPKKGFQVY 1156

Query: 171  TDASNTGLGCVLMQEGQVIAYASRQLNAHEKNYPTHDLELAAIIHALKIWRHYVY 7
             DAS  GLGCVLMQ+G+V+AYASRQL  HEKNYPTHDLELAA++HALKIWRHY++
Sbjct: 1157 CDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLF 1211