BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043965
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF97396.1| retrotransposon protein, putative, Ty3-gypsy subc...    92   3e-17
gb|AAR06341.1| putative polyprotein [Oryza sativa Japonica Group]      92   3e-17
gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Jap...    92   6e-17
gb|AAO19383.1| putative polyprotein [Oryza sativa Japonica Group...    91   8e-17
gb|ABD28305.1| RNA-directed DNA polymerase (Reverse transcriptas...    91   8e-17

>gb|ABF97396.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1129

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
 Frame = -3

Query: 319  LTSHKLYA--SKYEYWEKEVKFLGIVTSGDGMSVDPLKVETVPNWEQPANVSDIR*FLGL 146
            L  H+L+A  SKYE+W  EVKFLG V S  G++VDP  VE+V NW+QP  VS+IR FLGL
Sbjct: 896  LREHQLFAKFSKYEFWLSEVKFLGHVISARGVAVDPSNVESVTNWKQPNTVSEIRSFLGL 955

Query: 145  AGYY*RFIDGFSSIA 101
            AGYY RFI+ FS IA
Sbjct: 956  AGYYRRFIENFSKIA 970


>gb|AAR06341.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1116

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
 Frame = -3

Query: 319  LTSHKLYA--SKYEYWEKEVKFLGIVTSGDGMSVDPLKVETVPNWEQPANVSDIR*FLGL 146
            L  H+L+A  SKYE+W  EVKFLG V S  G++VDP  VE+V NW+QP  VS+IR FLGL
Sbjct: 883  LREHQLFAKFSKYEFWLSEVKFLGHVISARGVAVDPSNVESVTNWKQPNTVSEIRSFLGL 942

Query: 145  AGYY*RFIDGFSSIA 101
            AGYY RFI+ FS IA
Sbjct: 943  AGYYRRFIENFSKIA 957


>gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Japonica Group]
           gi|20042905|gb|AAM08733.1|AC116601_26 Putative
           polyprotein [Oryza sativa Japonica Group]
           gi|31429938|gb|AAP51922.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1443

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 47/76 (61%), Positives = 56/76 (73%), Gaps = 2/76 (2%)
 Frame = -3

Query: 322 ILTSHKLYA--SKYEYWEKEVKFLGIVTSGDGMSVDPLKVETVPNWEQPANVSDIR*FLG 149
           +L  H+LYA  SK E+W  EVKFLG V S  G++VDP  VE+V NW+QP  VS+IR FLG
Sbjct: 682 MLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLG 741

Query: 148 LAGYY*RFIDGFSSIA 101
           LAGYY RFI+ FS IA
Sbjct: 742 LAGYYRRFIENFSKIA 757


>gb|AAO19383.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108710558|gb|ABF98353.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1770

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
 Frame = -3

Query: 319  LTSHKLYA--SKYEYWEKEVKFLGIVTSGDGMSVDPLKVETVPNWEQPANVSDIR*FLGL 146
            L  H+LYA  SK E+W  EVKFLG V S  G++VDP  VE+V NW+QP  VS+IR FLGL
Sbjct: 994  LREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGL 1053

Query: 145  AGYY*RFIDGFSSIA 101
            AGYY RFI+ FS IA
Sbjct: 1054 AGYYRRFIENFSKIA 1068


>gb|ABD28305.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 579

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 47/76 (61%), Positives = 55/76 (72%), Gaps = 2/76 (2%)
 Frame = -3

Query: 322 ILTSHKLYA--SKYEYWEKEVKFLGIVTSGDGMSVDPLKVETVPNWEQPANVSDIR*FLG 149
           +L   KLYA  SK E+W KEV FLG V SGDG+ VDP KVE V  WE P +V++IR  LG
Sbjct: 375 VLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIVVDPSKVEAVSQWETPKSVTEIRSLLG 434

Query: 148 LAGYY*RFIDGFSSIA 101
           LAGYY RFI+GFS +A
Sbjct: 435 LAGYYRRFIEGFSKLA 450