BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043833
         (404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containi...   130   9e-29
ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containi...   124   1e-26
ref|XP_002513633.1| pentatricopeptide repeat-containing protein,...   124   1e-26
ref|XP_002305943.1| predicted protein [Populus trichocarpa] gi|2...   117   1e-24
ref|XP_003592182.1| Pentatricopeptide repeat-containing protein ...   114   6e-24

>ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
           gi|302143764|emb|CBI22625.3| unnamed protein product
           [Vitis vinifera]
          Length = 880

 Score =  130 bits (328), Expect = 9e-29
 Identities = 69/134 (51%), Positives = 81/134 (60%)
 Frame = -1

Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225
           PNS T++ IL  C T  +  + RKLH   IK   D D ++GNALVD Y+ L MV+DAW V
Sbjct: 417 PNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHV 476

Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45
             MM +RDVITYT LA  +N  G+HE  L II  M  DDV+MD F              M
Sbjct: 477 TSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIM 536

Query: 44  EPGKQLHCYSVKSG 3
           E GKQLHCYSVKSG
Sbjct: 537 ETGKQLHCYSVKSG 550



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
 Frame = -1

Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRL-EMVEDAWK 228
           PN+ T +GIL  C +  A    +++H+  +    + D  +GN+LVD+Y +   M+EDA +
Sbjct: 315 PNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVR 374

Query: 227 VIKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXA 48
             + + + +VI++T L AG +  G  E+++ +   MQ   V+ + F             +
Sbjct: 375 AFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKS 434

Query: 47  MEPGKQLHCYSVKS 6
           +   ++LH Y +K+
Sbjct: 435 LTQTRKLHGYIIKN 448



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/105 (27%), Positives = 53/105 (50%)
 Frame = -1

Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225
           PN  T++  L+ C          +  AL  K   D + +LG+AL+D YS+    ++A++V
Sbjct: 114 PNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRV 173

Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEF 90
            + M N D++++T++ +     G   + L +  RM    V  +EF
Sbjct: 174 FEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEF 218


>ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic-like [Glycine max]
          Length = 903

 Score =  124 bits (310), Expect = 1e-26
 Identities = 65/134 (48%), Positives = 80/134 (59%)
 Frame = -1

Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225
           PNS T++ IL  C    +  + +KLH   IK + D D  +GNALVD Y+   M ++AW V
Sbjct: 420 PNSFTLSTILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSV 479

Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45
           I MM +RD+ITYT LAA LN  G HE  L +I  M +D+VKMDEF              M
Sbjct: 480 IGMMNHRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIM 539

Query: 44  EPGKQLHCYSVKSG 3
           E GKQLHCYS KSG
Sbjct: 540 ETGKQLHCYSFKSG 553


>ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547541|gb|EEF49036.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 777

 Score =  124 bits (310), Expect = 1e-26
 Identities = 62/134 (46%), Positives = 83/134 (61%)
 Frame = -1

Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225
           PNS T++ +L+ C    +P +  KLH   IK + D+D ++GNALVD Y+    V+DAW+V
Sbjct: 421 PNSFTLSIVLRVCSAIKSPYQTLKLHGHIIKTKADYDVVVGNALVDAYAGSGRVDDAWRV 480

Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45
           +K M  RD ITYT LA  LN MG+HE  L +I+ M + DVK+D F              +
Sbjct: 481 VKDMNQRDSITYTSLATRLNQMGYHELALSVISHMFNADVKIDGFSLTCFFSASASLGRI 540

Query: 44  EPGKQLHCYSVKSG 3
           E GKQLHCYS+KSG
Sbjct: 541 ETGKQLHCYSLKSG 554



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 39/134 (29%), Positives = 66/134 (49%)
 Frame = -1

Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225
           PN+ T + IL+ C   G     +++HA SIK   + + ILG++L+D+YSR +  EDA K+
Sbjct: 118 PNAFTFSSILRSCFALGDFSYGKRIHASSIKHGFESNQILGSSLIDLYSRFDSTEDACKL 177

Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45
              M + D +++T + A     G     L I   M +  V  +EF              +
Sbjct: 178 FSYMDSGDTVSWTTVIASCVQAGKCSHALRIYMEMLEAQVSSNEF-TFVRLLAASSFIGL 236

Query: 44  EPGKQLHCYSVKSG 3
           + GK +H +++  G
Sbjct: 237 QYGKLIHAHAIVLG 250


>ref|XP_002305943.1| predicted protein [Populus trichocarpa] gi|222848907|gb|EEE86454.1|
           predicted protein [Populus trichocarpa]
          Length = 693

 Score =  117 bits (293), Expect = 1e-24
 Identities = 61/134 (45%), Positives = 81/134 (60%)
 Frame = -1

Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225
           PNS+T++ IL+ C  A +  ++ KLH   IK   D D  + NALVD Y+  E V+DAW +
Sbjct: 342 PNSVTLSIILRSCRAAKSASQLLKLHGHVIKTNADHDIAVSNALVDAYAGNERVDDAWHL 401

Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45
           I+ M+ RD +TYT LA  LN MGHHE  L +I  M +DD+KMD +             ++
Sbjct: 402 IRNMSQRDALTYTGLATRLNQMGHHEMALHVINHMFNDDIKMDGYSMAGFLSASAGLNSV 461

Query: 44  EPGKQLHCYSVKSG 3
           E G QLH YSVKSG
Sbjct: 462 ETGMQLHSYSVKSG 475


>ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355481230|gb|AES62433.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  114 bits (286), Expect = 6e-24
 Identities = 61/134 (45%), Positives = 75/134 (55%)
 Frame = -1

Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225
           PNS T++ IL  C    +      LH   IK + D D  + NALVD Y+ + M+++AW V
Sbjct: 418 PNSFTMSAILGACSKTRSLVPTMMLHGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSV 477

Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45
           I  M  RD ITYT LAA LN  GHH   L ++  M +D +KMDEF              M
Sbjct: 478 IGTMNLRDSITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLASFLSAAAGLGTM 537

Query: 44  EPGKQLHCYSVKSG 3
           E GKQLHCYSVKSG
Sbjct: 538 ETGKQLHCYSVKSG 551