BLASTX nr result
ID: Coptis25_contig00043833
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00043833 (404 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containi... 130 9e-29 ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containi... 124 1e-26 ref|XP_002513633.1| pentatricopeptide repeat-containing protein,... 124 1e-26 ref|XP_002305943.1| predicted protein [Populus trichocarpa] gi|2... 117 1e-24 ref|XP_003592182.1| Pentatricopeptide repeat-containing protein ... 114 6e-24 >ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Vitis vinifera] gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera] Length = 880 Score = 130 bits (328), Expect = 9e-29 Identities = 69/134 (51%), Positives = 81/134 (60%) Frame = -1 Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225 PNS T++ IL C T + + RKLH IK D D ++GNALVD Y+ L MV+DAW V Sbjct: 417 PNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHV 476 Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45 MM +RDVITYT LA +N G+HE L II M DDV+MD F M Sbjct: 477 TSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIM 536 Query: 44 EPGKQLHCYSVKSG 3 E GKQLHCYSVKSG Sbjct: 537 ETGKQLHCYSVKSG 550 Score = 61.2 bits (147), Expect = 8e-08 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Frame = -1 Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRL-EMVEDAWK 228 PN+ T +GIL C + A +++H+ + + D +GN+LVD+Y + M+EDA + Sbjct: 315 PNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVR 374 Query: 227 VIKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXA 48 + + + +VI++T L AG + G E+++ + MQ V+ + F + Sbjct: 375 AFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKS 434 Query: 47 MEPGKQLHCYSVKS 6 + ++LH Y +K+ Sbjct: 435 LTQTRKLHGYIIKN 448 Score = 55.1 bits (131), Expect = 6e-06 Identities = 29/105 (27%), Positives = 53/105 (50%) Frame = -1 Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225 PN T++ L+ C + AL K D + +LG+AL+D YS+ ++A++V Sbjct: 114 PNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRV 173 Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEF 90 + M N D++++T++ + G + L + RM V +EF Sbjct: 174 FEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEF 218 >ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic-like [Glycine max] Length = 903 Score = 124 bits (310), Expect = 1e-26 Identities = 65/134 (48%), Positives = 80/134 (59%) Frame = -1 Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225 PNS T++ IL C + + +KLH IK + D D +GNALVD Y+ M ++AW V Sbjct: 420 PNSFTLSTILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSV 479 Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45 I MM +RD+ITYT LAA LN G HE L +I M +D+VKMDEF M Sbjct: 480 IGMMNHRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIM 539 Query: 44 EPGKQLHCYSVKSG 3 E GKQLHCYS KSG Sbjct: 540 ETGKQLHCYSFKSG 553 >ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547541|gb|EEF49036.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 777 Score = 124 bits (310), Expect = 1e-26 Identities = 62/134 (46%), Positives = 83/134 (61%) Frame = -1 Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225 PNS T++ +L+ C +P + KLH IK + D+D ++GNALVD Y+ V+DAW+V Sbjct: 421 PNSFTLSIVLRVCSAIKSPYQTLKLHGHIIKTKADYDVVVGNALVDAYAGSGRVDDAWRV 480 Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45 +K M RD ITYT LA LN MG+HE L +I+ M + DVK+D F + Sbjct: 481 VKDMNQRDSITYTSLATRLNQMGYHELALSVISHMFNADVKIDGFSLTCFFSASASLGRI 540 Query: 44 EPGKQLHCYSVKSG 3 E GKQLHCYS+KSG Sbjct: 541 ETGKQLHCYSLKSG 554 Score = 65.9 bits (159), Expect = 3e-09 Identities = 39/134 (29%), Positives = 66/134 (49%) Frame = -1 Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225 PN+ T + IL+ C G +++HA SIK + + ILG++L+D+YSR + EDA K+ Sbjct: 118 PNAFTFSSILRSCFALGDFSYGKRIHASSIKHGFESNQILGSSLIDLYSRFDSTEDACKL 177 Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45 M + D +++T + A G L I M + V +EF + Sbjct: 178 FSYMDSGDTVSWTTVIASCVQAGKCSHALRIYMEMLEAQVSSNEF-TFVRLLAASSFIGL 236 Query: 44 EPGKQLHCYSVKSG 3 + GK +H +++ G Sbjct: 237 QYGKLIHAHAIVLG 250 >ref|XP_002305943.1| predicted protein [Populus trichocarpa] gi|222848907|gb|EEE86454.1| predicted protein [Populus trichocarpa] Length = 693 Score = 117 bits (293), Expect = 1e-24 Identities = 61/134 (45%), Positives = 81/134 (60%) Frame = -1 Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225 PNS+T++ IL+ C A + ++ KLH IK D D + NALVD Y+ E V+DAW + Sbjct: 342 PNSVTLSIILRSCRAAKSASQLLKLHGHVIKTNADHDIAVSNALVDAYAGNERVDDAWHL 401 Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45 I+ M+ RD +TYT LA LN MGHHE L +I M +DD+KMD + ++ Sbjct: 402 IRNMSQRDALTYTGLATRLNQMGHHEMALHVINHMFNDDIKMDGYSMAGFLSASAGLNSV 461 Query: 44 EPGKQLHCYSVKSG 3 E G QLH YSVKSG Sbjct: 462 ETGMQLHSYSVKSG 475 >ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 912 Score = 114 bits (286), Expect = 6e-24 Identities = 61/134 (45%), Positives = 75/134 (55%) Frame = -1 Query: 404 PNSITIAGILKGCVTAGAPRKVRKLHALSIKVREDFDTILGNALVDVYSRLEMVEDAWKV 225 PNS T++ IL C + LH IK + D D + NALVD Y+ + M+++AW V Sbjct: 418 PNSFTMSAILGACSKTRSLVPTMMLHGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSV 477 Query: 224 IKMMTNRDVITYTILAAGLNLMGHHEKTLGIIARMQDDDVKMDEFIXXXXXXXXXXXXAM 45 I M RD ITYT LAA LN GHH L ++ M +D +KMDEF M Sbjct: 478 IGTMNLRDSITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLASFLSAAAGLGTM 537 Query: 44 EPGKQLHCYSVKSG 3 E GKQLHCYSVKSG Sbjct: 538 ETGKQLHCYSVKSG 551