BLASTX nr result
ID: Coptis25_contig00043827
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00043827
(272 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera] 115 4e-24
ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containi... 113 2e-23
ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus c... 112 3e-23
ref|XP_002323422.1| predicted protein [Populus trichocarpa] gi|2... 110 1e-22
ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containi... 101 7e-20
>emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 115 bits (288), Expect = 4e-24
Identities = 56/89 (62%), Positives = 67/89 (75%)
Frame = +2
Query: 5 RVDNYTLPFVLRVCRDTLDLRMGRMSHGLVCKNGLDLDCFVLAAAVDMYAKCGAIEDSRK 184
R DNYTLPFV+R CRD +L+MGR+ H +V K GLDLD FV AA VDMY KC IED+R
Sbjct: 833 RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARF 892
Query: 185 VFDDMPKRDLVTWTVKIYAFADSGNPNEA 271
+FD M +RDLVTWTV I +A+ GN NE+
Sbjct: 893 LFDKMXERDLVTWTVMIGGYAECGNANES 921
Score = 113 bits (282), Expect = 2e-23
Identities = 55/89 (61%), Positives = 66/89 (74%)
Frame = +2
Query: 5 RVDNYTLPFVLRVCRDTLDLRMGRMSHGLVCKNGLDLDCFVLAAAVDMYAKCGAIEDSRK 184
R DNYTLPFV+R CRD +L+MGR+ H +V K GLDLD FV AA VDMY KC IED+R
Sbjct: 157 RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARF 216
Query: 185 VFDDMPKRDLVTWTVKIYAFADSGNPNEA 271
+FD M +RDLVTWTV I +A+ G NE+
Sbjct: 217 LFDKMQERDLVTWTVMIGGYAECGKANES 245
>ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 113 bits (282), Expect = 2e-23
Identities = 55/89 (61%), Positives = 66/89 (74%)
Frame = +2
Query: 5 RVDNYTLPFVLRVCRDTLDLRMGRMSHGLVCKNGLDLDCFVLAAAVDMYAKCGAIEDSRK 184
R DNYTLPFV+R CRD +L+MGR+ H +V K GLDLD FV AA VDMY KC IED+R
Sbjct: 27 RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARF 86
Query: 185 VFDDMPKRDLVTWTVKIYAFADSGNPNEA 271
+FD M +RDLVTWTV I +A+ G NE+
Sbjct: 87 LFDKMQERDLVTWTVMIGGYAECGKANES 115
Score = 100 bits (249), Expect = 1e-19
Identities = 50/87 (57%), Positives = 61/87 (70%)
Frame = +2
Query: 11 DNYTLPFVLRVCRDTLDLRMGRMSHGLVCKNGLDLDCFVLAAAVDMYAKCGAIEDSRKVF 190
D TL +L C D +L+MGR+ H +V K GLDLD FV AA VDMY KC IED+R +F
Sbjct: 231 DKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLF 290
Query: 191 DDMPKRDLVTWTVKIYAFADSGNPNEA 271
D MP+RDLVTWTV I +A+ GN NE+
Sbjct: 291 DKMPERDLVTWTVMIGGYAECGNANES 317
>ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130,
putative [Ricinus communis]
Length = 1530
Score = 112 bits (280), Expect = 3e-23
Identities = 54/90 (60%), Positives = 67/90 (74%)
Frame = +2
Query: 2 VRVDNYTLPFVLRVCRDTLDLRMGRMSHGLVCKNGLDLDCFVLAAAVDMYAKCGAIEDSR 181
V+ DNYTLPFV++ CRDT+ L MGR+ H +V K GL LD FV AA VDMYAKC IED++
Sbjct: 1177 VQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAK 1236
Query: 182 KVFDDMPKRDLVTWTVKIYAFADSGNPNEA 271
+FD MP +DLVTWTV I +A+ GN E+
Sbjct: 1237 LLFDVMPSKDLVTWTVMIGGYAECGNAKES 1266
Score = 57.8 bits (138), Expect = 9e-07
Identities = 25/87 (28%), Positives = 46/87 (52%)
Frame = +2
Query: 11 DNYTLPFVLRVCRDTLDLRMGRMSHGLVCKNGLDLDCFVLAAAVDMYAKCGAIEDSRKVF 190
D + ++ C + R H V +N LD + A +DMYAKCG ++ +R++F
Sbjct: 1281 DKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIF 1340
Query: 191 DDMPKRDLVTWTVKIYAFADSGNPNEA 271
D+M +++++W+ I A+ G +A
Sbjct: 1341 DNMHHKNVISWSAMIAAYGYHGQGKKA 1367
>ref|XP_002323422.1| predicted protein [Populus trichocarpa] gi|222868052|gb|EEF05183.1|
predicted protein [Populus trichocarpa]
Length = 574
Score = 110 bits (275), Expect = 1e-22
Identities = 50/87 (57%), Positives = 67/87 (77%)
Frame = +2
Query: 11 DNYTLPFVLRVCRDTLDLRMGRMSHGLVCKNGLDLDCFVLAAAVDMYAKCGAIEDSRKVF 190
DN++LPFV++ CRDT+ L MGR+ H V KNGL LD FV + VDMYAKCG I++++++F
Sbjct: 100 DNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLF 159
Query: 191 DDMPKRDLVTWTVKIYAFADSGNPNEA 271
D MPK+DLVT TV I +A+ G PNE+
Sbjct: 160 DRMPKKDLVTRTVMIAGYAECGKPNES 186
Score = 62.4 bits (150), Expect = 4e-08
Identities = 28/87 (32%), Positives = 47/87 (54%)
Frame = +2
Query: 11 DNYTLPFVLRVCRDTLDLRMGRMSHGLVCKNGLDLDCFVLAAAVDMYAKCGAIEDSRKVF 190
D + ++ C + R+ H VC LD + A +DMYAKCG+I+ SR++F
Sbjct: 201 DKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIF 260
Query: 191 DDMPKRDLVTWTVKIYAFADSGNPNEA 271
D M ++++++W+ I A+ G EA
Sbjct: 261 DRMEQKNVISWSAMIGAYGYHGQGREA 287
>ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 101 bits (251), Expect = 7e-20
Identities = 48/83 (57%), Positives = 63/83 (75%)
Frame = +2
Query: 2 VRVDNYTLPFVLRVCRDTLDLRMGRMSHGLVCKNGLDLDCFVLAAAVDMYAKCGAIEDSR 181
V DNYTLPFV+R CRD DL++GR+ H +V K+GL D FV A+ VDMYAKC +ED++
Sbjct: 97 VTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQ 156
Query: 182 KVFDDMPKRDLVTWTVKIYAFAD 250
++F+ M +DLVTWTV I A+AD
Sbjct: 157 RLFERMLSKDLVTWTVMIGAYAD 179
Score = 63.5 bits (153), Expect = 2e-08
Identities = 27/87 (31%), Positives = 49/87 (56%)
Frame = +2
Query: 11 DNYTLPFVLRVCRDTLDLRMGRMSHGLVCKNGLDLDCFVLAAAVDMYAKCGAIEDSRKVF 190
D + V+ C + R ++ + +NG LD + A +DMYAKCG++E +R+VF
Sbjct: 200 DKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVF 259
Query: 191 DDMPKRDLVTWTVKIYAFADSGNPNEA 271
D M ++++++W+ I A+ G +A
Sbjct: 260 DRMKEKNVISWSAMIAAYGYHGRGKDA 286