BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043809
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29241.3| unnamed protein product [Vitis vinifera]              159   3e-37
ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containi...   159   3e-37
ref|XP_002865693.1| pentatricopeptide repeat-containing protein ...   147   7e-34
ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33
ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33

>emb|CBI29241.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  159 bits (401), Expect = 3e-37
 Identities = 71/91 (78%), Positives = 85/91 (93%)
 Frame = +2

Query: 59  IKPDDVIWKALLGACKLHGHIEMGKRIAENLMELAPRDSGGYVALSNMYASLGDWGSVAE 238
           IKPDDVIWKALLGACK+HG++EMGKR+AE+LMELAP DSG YVALSN+YASLG+W  VA+
Sbjct: 307 IKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAK 366

Query: 239 TRMRMKELNIRKDPGCSWIELDGMINEFLVE 331
            R+ MKE+++RKDPGCSWIELDG+I+EFLVE
Sbjct: 367 VRLMMKEMDVRKDPGCSWIELDGVIHEFLVE 397


>ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  159 bits (401), Expect = 3e-37
 Identities = 71/91 (78%), Positives = 85/91 (93%)
 Frame = +2

Query: 59  IKPDDVIWKALLGACKLHGHIEMGKRIAENLMELAPRDSGGYVALSNMYASLGDWGSVAE 238
           IKPDDVIWKALLGACK+HG++EMGKR+AE+LMELAP DSG YVALSN+YASLG+W  VA+
Sbjct: 424 IKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAK 483

Query: 239 TRMRMKELNIRKDPGCSWIELDGMINEFLVE 331
            R+ MKE+++RKDPGCSWIELDG+I+EFLVE
Sbjct: 484 VRLMMKEMDVRKDPGCSWIELDGVIHEFLVE 514


>ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297311528|gb|EFH41952.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 640

 Score =  147 bits (372), Expect = 7e-34
 Identities = 64/91 (70%), Positives = 81/91 (89%)
 Frame = +2

Query: 59  IKPDDVIWKALLGACKLHGHIEMGKRIAENLMELAPRDSGGYVALSNMYASLGDWGSVAE 238
           IKPDDVIWKALLGAC++H ++EMGKR+A  LM++ P DSG YVALSNMYAS G+W  V+E
Sbjct: 433 IKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSE 492

Query: 239 TRMRMKELNIRKDPGCSWIELDGMINEFLVE 331
            R+RMKE++IRKDPGCSWI++DG+++EFLVE
Sbjct: 493 MRLRMKEMDIRKDPGCSWIDIDGVLHEFLVE 523


>ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  146 bits (368), Expect = 2e-33
 Identities = 65/91 (71%), Positives = 82/91 (90%)
 Frame = +2

Query: 59  IKPDDVIWKALLGACKLHGHIEMGKRIAENLMELAPRDSGGYVALSNMYASLGDWGSVAE 238
           I+PDDVIWKALLGACK+H +++MG+R+AE LMELAP DSG YVALSN+YASLG+W +VA 
Sbjct: 435 IEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVAR 494

Query: 239 TRMRMKELNIRKDPGCSWIELDGMINEFLVE 331
            R++MK ++IRKDPGCSWIE+ G+I+EFLVE
Sbjct: 495 VRLKMKGMDIRKDPGCSWIEIHGIIHEFLVE 525


>ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  146 bits (368), Expect = 2e-33
 Identities = 65/91 (71%), Positives = 82/91 (90%)
 Frame = +2

Query: 59  IKPDDVIWKALLGACKLHGHIEMGKRIAENLMELAPRDSGGYVALSNMYASLGDWGSVAE 238
           I+PDDVIWKALLGACK+H +++MG+R+AE LMELAP DSG YVALSN+YASLG+W +VA 
Sbjct: 435 IEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVAR 494

Query: 239 TRMRMKELNIRKDPGCSWIELDGMINEFLVE 331
            R++MK ++IRKDPGCSWIE+ G+I+EFLVE
Sbjct: 495 VRLKMKGMDIRKDPGCSWIEIHGIIHEFLVE 525