BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043776
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...    72   5e-11
gb|AEL30359.1| RNA-directed DNA polymerase [Arachis hypogaea]          70   1e-10
gb|ABN08700.1| Endonuclease/exonuclease/phosphatase [Medicago tr...    68   7e-10
gb|ABN05905.1| reverse transcriptase, related [Medicago truncatula]    64   2e-08
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    63   2e-08

>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 36/99 (36%), Positives = 56/99 (56%)
 Frame = +1

Query: 7   FINDNALLDSTTLGYEFSYCNKRLGAARMLQKIDRILVNQEWLQVLPNWSNKILKRKFSD 186
           +I  NALLD    G +F++ N R G + + +++DR LVN EWL + P+     L R FSD
Sbjct: 166 WIAANALLDLGFQGPKFTWTNGRTGGSLIKERLDRALVNSEWLDLFPDTKVIHLPRTFSD 225

Query: 187 HSPVVGWSPFIPKPHNIPFRFMKMWLDHANLKQVVTESW 303
           H P++      P+  + PFR  ++W  H +   V+ E+W
Sbjct: 226 HCPLLILFNENPRSESFPFRCKEVWAYHPDFTNVIEETW 264


>gb|AEL30359.1| RNA-directed DNA polymerase [Arachis hypogaea]
          Length = 1613

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
 Frame = +1

Query: 10  INDNALLDSTTLGYEFSYCNKRLGAARMLQKIDRILVNQEWLQVLPNWSNKILKRKFSDH 189
           + D+ L D  T+G +FS+  +      + +K+DR+ +N  WL + P    ++L R  SDH
Sbjct: 564 LGDSGLFDLKTIGRQFSWYRRVKNYVDVAKKLDRVCINNSWLSIFPEAYAEVLNRLQSDH 623

Query: 190 SPVVGWSPFIPKPH-NIPFRFMKMWLDHANLKQVVTESW 303
            P++      P+P  N PFRF+  W  H   + +V +SW
Sbjct: 624 CPILVRCKGRPQPKGNRPFRFIAAWATHPGYRDIVNQSW 662


>gb|ABN08700.1| Endonuclease/exonuclease/phosphatase [Medicago truncatula]
          Length = 814

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
 Frame = +1

Query: 19   NALLDSTTLGYEFSYCNKRLGAARMLQKIDRILVNQEWLQVLPNWSNKILKRKFSDHSPV 198
            N L +  T+G  +++CN +    R+  KIDR + N  WLQ   N   ++L +  SDH P+
Sbjct: 688  NRLSEVRTIGDYYTWCNNQTSGDRIYSKIDRFIANTSWLQKFTNAVGEVLPKGVSDHCPI 747

Query: 199  VGWSPFIPKPHNIPFRFMKMWLDHANLKQVVTESWNEPL-VDVPIRKVMKKLKR 357
                     P N PFRF+ +  DH     ++ E W   L   V +  + K+ KR
Sbjct: 748  SMDMSCPASPKNTPFRFINVLTDHHLFPALIQEKWGPNLHTMVQVESLEKRSKR 801


>gb|ABN05905.1| reverse transcriptase, related [Medicago truncatula]
          Length = 328

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 29/94 (30%), Positives = 52/94 (55%)
 Frame = +1

Query: 73  RLGAARMLQKIDRILVNQEWLQVLPNWSNKILKRKFSDHSPVVGWSPFIPKPHNIPFRFM 252
           R G     +++DR + NQ W+  + + +   L R  SDH P++ +        +  F+F+
Sbjct: 144 RSGTRNTERRLDRCICNQRWMDFVSSVNCSTLIRNQSDHYPILLYFQLTNHKFSSQFKFL 203

Query: 253 KMWLDHANLKQVVTESWNEPLVDVPIRKVMKKLK 354
           KMW  H N K+V+ +SW+ P++  P+  + KKL+
Sbjct: 204 KMWSLHENCKEVIQDSWSLPVIGCPMFVLSKKLQ 237


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
 Frame = +1

Query: 13  NDNALLDSTTLGYEFSYCNKRLGAARMLQKIDRILVNQEWLQVLPNWS-----NKILKRK 177
           N N L    TLG  +++ N RLG+  +  ++DR + N+EW+    + S     N  L R 
Sbjct: 166 NANLLHHLPTLGAFYTWSNGRLGSDNVALRLDRAICNEEWVNFWRSSSCSALGNSALVRH 225

Query: 178 FSDHSPVVGWSPFIPKPHNIPFRFMKMWLDHANLKQVVTESWNEPLVDVPIRKVMKKLK 354
            SDH P++    F     +  F+F K W +H + +++V E+W++      + ++  KLK
Sbjct: 226 QSDHHPLLMSMDFCTSQRSGNFKFFKTWTEHEDCRRIVAENWSKHTRGHGMTRLQAKLK 284