BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043751
         (390 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530828.1| conserved hypothetical protein [Ricinus comm...    54   1e-12
ref|XP_002536610.1| conserved hypothetical protein [Ricinus comm...    45   5e-10
ref|YP_717101.1| hypothetical protein BrnapMp002 [Brassica napus...    47   1e-09
ref|YP_717102.1| hypothetical protein BrnapMp003 [Brassica napus...    44   2e-09
ref|YP_002608349.1| orf185 [Vitis vinifera] gi|209954145|emb|CAQ...    44   1e-08

>ref|XP_002530828.1| conserved hypothetical protein [Ricinus communis]
           gi|223529592|gb|EEF31541.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 229

 Score = 53.9 bits (128), Expect(2) = 1e-12
 Identities = 26/30 (86%), Positives = 27/30 (90%)
 Frame = +2

Query: 32  SGPRGVYSTHSPVSRTAQVSVRLRMRASFP 121
           S PRGVYST+SPVS TAQVSVRLRMR SFP
Sbjct: 25  SRPRGVYSTYSPVSHTAQVSVRLRMRTSFP 54



 Score = 43.9 bits (102), Expect(2) = 1e-12
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = +3

Query: 141 SVHTVIKADEEGWAEGTPRTLCPTHLSRSKCSSPIP 248
           S+ T          +  PR LCPTHLSRSKCSSP+P
Sbjct: 58  SLFTRFSKQRRKGGQKVPRALCPTHLSRSKCSSPVP 93


>ref|XP_002536610.1| conserved hypothetical protein [Ricinus communis]
           gi|223519108|gb|EEF25773.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 184

 Score = 45.1 bits (105), Expect(2) = 5e-10
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = +1

Query: 121 SFPSAHSPFTRLSKRMRKGGQKV 189
           SFPSAHSPFTR SK+ RKGGQKV
Sbjct: 4   SFPSAHSPFTRFSKQRRKGGQKV 26



 Score = 43.5 bits (101), Expect(2) = 5e-10
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 192 PRTLCPTHLSRSKCSSPIP 248
           PR LCPTHLSRSKCSSP+P
Sbjct: 27  PRALCPTHLSRSKCSSPVP 45


>ref|YP_717101.1| hypothetical protein BrnapMp002 [Brassica napus]
           gi|353526430|ref|YP_004927502.1| orf120 (mitochondrion)
           [Brassica oleracea] gi|353526492|ref|YP_004927563.1|
           orf120 (mitochondrion) [Brassica carinata]
           gi|353526654|ref|YP_004927821.1| orf120 (mitochondrion)
           [Brassica rapa subsp. campestris]
           gi|353531338|ref|YP_004927724.1| orf120 (mitochondrion)
           [Brassica juncea] gi|37591047|dbj|BAC98849.1|
           hypothetical protein [Brassica napus]
           gi|335354842|gb|AEH43398.1| orf120 [Brassica rapa subsp.
           campestris] gi|335354975|gb|AEH43530.1| orf120 [Brassica
           oleracea] gi|335355023|gb|AEH43577.1| orf120 [Brassica
           carinata] gi|335355071|gb|AEH43624.1| orf120 [Brassica
           juncea] gi|339511267|emb|CBX48322.1| unnamed protein
           product [Brassica napus]
          Length = 120

 Score = 47.4 bits (111), Expect(2) = 1e-09
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = -2

Query: 188 TFCPPFLIRFDNRVNGEWAEGKE 120
           TFCPPFL+ F+N VNGEWAEGKE
Sbjct: 86  TFCPPFLLCFENCVNGEWAEGKE 108



 Score = 40.0 bits (92), Expect(2) = 1e-09
 Identities = 21/36 (58%), Positives = 22/36 (61%)
 Frame = -3

Query: 298 SPTTVKGNVSVERQTMCGIGELHLLLDRCVGQRVRG 191
           S T    N+  E     G GELHLLLDRCVGQR RG
Sbjct: 50  SITAHSHNLCREIGAFGGTGELHLLLDRCVGQRARG 85


>ref|YP_717102.1| hypothetical protein BrnapMp003 [Brassica napus]
           gi|353526431|ref|YP_004927503.1| orf115a (mitochondrion)
           [Brassica oleracea] gi|353526491|ref|YP_004927562.1|
           orf115a (mitochondrion) [Brassica carinata]
           gi|353526655|ref|YP_004927822.1| orf115a (mitochondrion)
           [Brassica rapa subsp. campestris]
           gi|353531339|ref|YP_004927725.1| orf105a (mitochondrion)
           [Brassica juncea] gi|37591048|dbj|BAC98850.1|
           hypothetical protein [Brassica napus]
           gi|335354843|gb|AEH43399.1| orf115a [Brassica rapa
           subsp. campestris] gi|335354976|gb|AEH43531.1| orf115a
           [Brassica oleracea] gi|335355022|gb|AEH43576.1| orf115a
           [Brassica carinata] gi|335355072|gb|AEH43625.1| orf105a
           [Brassica juncea] gi|339511268|emb|CBX48323.1| unnamed
           protein product [Brassica napus]
          Length = 115

 Score = 43.5 bits (101), Expect(2) = 2e-09
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 121 SFPSAHSPFTRLSKRMRKGGQKV 189
           SFPSAHSPFT+ SK+ RKGGQKV
Sbjct: 4   SFPSAHSPFTQFSKQRRKGGQKV 26



 Score = 43.5 bits (101), Expect(2) = 2e-09
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 192 PRTLCPTHLSRSKCSSPIP 248
           PR LCPTHLSRSKCSSP+P
Sbjct: 27  PRALCPTHLSRSKCSSPVP 45


>ref|YP_002608349.1| orf185 [Vitis vinifera] gi|209954145|emb|CAQ77575.1| orf185 [Vitis
           vinifera] gi|239764756|gb|ACS15226.1| ORF185 [Vitis
           vinifera]
          Length = 184

 Score = 43.5 bits (101), Expect(2) = 1e-08
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 192 PRTLCPTHLSRSKCSSPIP 248
           PR LCPTHLSRSKCSSP+P
Sbjct: 27  PRALCPTHLSRSKCSSPVP 45



 Score = 40.8 bits (94), Expect(2) = 1e-08
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +1

Query: 121 SFPSAHSPFTRLSKRMRKGGQKV 189
           SFPSAHSPFTR SK+  KGGQ+V
Sbjct: 4   SFPSAHSPFTRFSKQRGKGGQQV 26