BLASTX nr result
ID: Coptis25_contig00043735
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00043735
(321 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containi... 120 2e-25
emb|CBI36552.3| unnamed protein product [Vitis vinifera] 119 3e-25
ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containi... 119 3e-25
ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 117 1e-24
ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containi... 117 1e-24
>ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 120 bits (300), Expect = 2e-25
Identities = 56/102 (54%), Positives = 78/102 (76%)
Frame = +1
Query: 16 SALKCDRVGKMLHAHSIVDGFERDVFVGSAVMSFYLKFSHVWIARKVFDRMSSPDTVSWN 195
SA D +G LHAH++VDGF+ ++FV SA++ Y KFS V ARKVFD+M DTV WN
Sbjct: 114 SASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWN 173
Query: 196 TMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTLSNVLPAVA 321
TMI+GLV+N C+D+S++VF++M +G + DS+T++ VLPAVA
Sbjct: 174 TMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVA 215
Score = 62.0 bits (149), Expect = 5e-08
Identities = 36/105 (34%), Positives = 59/105 (56%)
Frame = +1
Query: 1 IISSASALKCDRVGKMLHAHSIVDGFERDVFVGSAVMSFYLKFSHVWIARKVFDRMSSPD 180
I+S+ + L GK +H E++++V +A++ Y K ++ A ++FD S +
Sbjct: 412 ILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKN 471
Query: 181 TVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTLSNVLPA 315
TV+WNTMI G +G DE++K+F EM G + S T +VL A
Sbjct: 472 TVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYA 516
>emb|CBI36552.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 119 bits (298), Expect = 3e-25
Identities = 63/107 (58%), Positives = 78/107 (72%)
Frame = +1
Query: 1 IISSASALKCDRVGKMLHAHSIVDGFERDVFVGSAVMSFYLKFSHVWIARKVFDRMSSPD 180
+IS AS+L +G +LHAHSIV GF D+FVGSA+++ Y KFS V ARKVFD M D
Sbjct: 115 VISGASSLG---LGLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERD 171
Query: 181 TVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTLSNVLPAVA 321
TV WNTM+SGLVKN CFDE+I +F +M G FDS+T++ VLP VA
Sbjct: 172 TVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVA 218
>ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 119 bits (298), Expect = 3e-25
Identities = 63/107 (58%), Positives = 78/107 (72%)
Frame = +1
Query: 1 IISSASALKCDRVGKMLHAHSIVDGFERDVFVGSAVMSFYLKFSHVWIARKVFDRMSSPD 180
+IS AS+L +G +LHAHSIV GF D+FVGSA+++ Y KFS V ARKVFD M D
Sbjct: 115 VISGASSLG---LGLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERD 171
Query: 181 TVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTLSNVLPAVA 321
TV WNTM+SGLVKN CFDE+I +F +M G FDS+T++ VLP VA
Sbjct: 172 TVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVA 218
Score = 55.5 bits (132), Expect = 5e-06
Identities = 28/87 (32%), Positives = 49/87 (56%)
Frame = +1
Query: 1 IISSASALKCDRVGKMLHAHSIVDGFERDVFVGSAVMSFYLKFSHVWIARKVFDRMSSPD 180
I+S+ + L +GK +H + FE ++FV +A++ Y K + A+++F M +
Sbjct: 415 ILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKN 474
Query: 181 TVSWNTMISGLVKNGCFDESIKVFEEM 261
V+WN MISG +G E++ +F EM
Sbjct: 475 AVTWNAMISGYGLHGYGHEALNLFNEM 501
>ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 117 bits (293), Expect = 1e-24
Identities = 60/106 (56%), Positives = 77/106 (72%)
Frame = +1
Query: 4 ISSASALKCDRVGKMLHAHSIVDGFERDVFVGSAVMSFYLKFSHVWIARKVFDRMSSPDT 183
IS+AS L+ +RVG +LHAHSIVDG ++FVGSA++ Y KF+ +ARKVFD M DT
Sbjct: 120 ISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDT 179
Query: 184 VSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTLSNVLPAVA 321
V WNTMISG +N F++SI+VF +M G FDS+TL+ VL AVA
Sbjct: 180 VLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225
Score = 58.2 bits (139), Expect = 7e-07
Identities = 30/104 (28%), Positives = 57/104 (54%)
Frame = +1
Query: 1 IISSASALKCDRVGKMLHAHSIVDGFERDVFVGSAVMSFYLKFSHVWIARKVFDRMSSPD 180
++++ + L+ R+G + + G DV+V + ++S Y K R +FD++ PD
Sbjct: 220 VLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPD 279
Query: 181 TVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTLSNVLP 312
+S+N MISG N + ++ +F E+ G + +SSTL ++P
Sbjct: 280 LISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIP 323
Score = 56.2 bits (134), Expect = 3e-06
Identities = 33/105 (31%), Positives = 56/105 (53%)
Frame = +1
Query: 1 IISSASALKCDRVGKMLHAHSIVDGFERDVFVGSAVMSFYLKFSHVWIARKVFDRMSSPD 180
I+S+ + L +GK +H + E +V+V +A++ Y K + AR++FD M +
Sbjct: 421 ILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKN 480
Query: 181 TVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTLSNVLPA 315
V+WN MI+G +G E++K+F EM G T ++L A
Sbjct: 481 VVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYA 525
>ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 117 bits (293), Expect = 1e-24
Identities = 60/106 (56%), Positives = 77/106 (72%)
Frame = +1
Query: 4 ISSASALKCDRVGKMLHAHSIVDGFERDVFVGSAVMSFYLKFSHVWIARKVFDRMSSPDT 183
IS+AS L+ +RVG +LHAHSIVDG ++FVGSA++ Y KF+ +ARKVFD M DT
Sbjct: 120 ISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDT 179
Query: 184 VSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTLSNVLPAVA 321
V WNTMISG +N F++SI+VF +M G FDS+TL+ VL AVA
Sbjct: 180 VLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225
Score = 58.2 bits (139), Expect = 7e-07
Identities = 30/104 (28%), Positives = 57/104 (54%)
Frame = +1
Query: 1 IISSASALKCDRVGKMLHAHSIVDGFERDVFVGSAVMSFYLKFSHVWIARKVFDRMSSPD 180
++++ + L+ R+G + + G DV+V + ++S Y K R +FD++ PD
Sbjct: 220 VLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPD 279
Query: 181 TVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTLSNVLP 312
+S+N MISG N + ++ +F E+ G + +SSTL ++P
Sbjct: 280 LISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIP 323
Score = 56.2 bits (134), Expect = 3e-06
Identities = 33/105 (31%), Positives = 56/105 (53%)
Frame = +1
Query: 1 IISSASALKCDRVGKMLHAHSIVDGFERDVFVGSAVMSFYLKFSHVWIARKVFDRMSSPD 180
I+S+ + L +GK +H + E +V+V +A++ Y K + AR++FD M +
Sbjct: 421 ILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKN 480
Query: 181 TVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTLSNVLPA 315
V+WN MI+G +G E++K+F EM G T ++L A
Sbjct: 481 VVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYA 525