BLASTX nr result
ID: Coptis25_contig00043709
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00043709 (289 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group] 63 3e-08 gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc... 62 6e-08 pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 61 8e-08 emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera] 59 4e-07 gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat... 59 5e-07 >emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group] Length = 1087 Score = 62.8 bits (151), Expect = 3e-08 Identities = 28/70 (40%), Positives = 44/70 (62%) Frame = +2 Query: 77 TRHRDGIHRPLVRNDGTVQYPLPCALAAQLTSSIEEPTCYSQAIRFPEWRQAMTDKFNAL 256 TR + I +PL R DGT+++ + + S +EPTC+ A+ W++AM +++NAL Sbjct: 609 TRLQSNIRKPLTRTDGTIRWGM-------YSGSDKEPTCFDDALADENWKKAMDEEYNAL 661 Query: 257 LKNKTWTLVP 286 +KN TW LVP Sbjct: 662 IKNNTWHLVP 671 >gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 900 Score = 61.6 bits (148), Expect = 6e-08 Identities = 32/75 (42%), Positives = 42/75 (56%) Frame = +2 Query: 65 QTMVTRHRDGIHRPLVRNDGTVQYPLPCALAAQLTSSIEEPTCYSQAIRFPEWRQAMTDK 244 Q VTR + G+HRP DGTV+Y + EP+ +A+ W+QAM + Sbjct: 352 QRPVTRSQHGVHRPKKYTDGTVRYGC--------LTETGEPSSLQEALSSANWKQAMDKE 403 Query: 245 FNALLKNKTWTLVPP 289 F+ALL NKTW LVPP Sbjct: 404 FSALLHNKTWHLVPP 418 >pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch gi|531389|gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein [Zea mays] Length = 1439 Score = 61.2 bits (147), Expect = 8e-08 Identities = 32/71 (45%), Positives = 41/71 (57%) Frame = +2 Query: 77 TRHRDGIHRPLVRNDGTVQYPLPCALAAQLTSSIEEPTCYSQAIRFPEWRQAMTDKFNAL 256 TR + GI +P DGTV+Y + I EP+ S+A+ P+WR AM +F AL Sbjct: 896 TRLQHGISKPKQFTDGTVRY-------GNAAARITEPSSVSEALADPQWRAAMEAEFQAL 948 Query: 257 LKNKTWTLVPP 289 KN TWTLVPP Sbjct: 949 QKNNTWTLVPP 959 >emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera] Length = 1112 Score = 58.9 bits (141), Expect = 4e-07 Identities = 30/72 (41%), Positives = 44/72 (61%) Frame = +2 Query: 71 MVTRHRDGIHRPLVRNDGTVQYPLPCALAAQLTSSIEEPTCYSQAIRFPEWRQAMTDKFN 250 +VTR + IH+P+ + + L A L EPT +QA++ P+WRQAM+ +F+ Sbjct: 590 IVTRSKHNIHKPIQKXN----------LTAXLQQPTLEPTTVTQALKDPKWRQAMSAEFD 639 Query: 251 ALLKNKTWTLVP 286 ALL+N TW LVP Sbjct: 640 ALLRNGTWDLVP 651 >gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1058 Score = 58.5 bits (140), Expect = 5e-07 Identities = 32/71 (45%), Positives = 42/71 (59%) Frame = +2 Query: 77 TRHRDGIHRPLVRNDGTVQYPLPCALAAQLTSSIEEPTCYSQAIRFPEWRQAMTDKFNAL 256 TR R GIH+P DGT++Y A L S+ EEP +A++ W+ AM +F AL Sbjct: 546 TRSRHGIHKPKKYTDGTIRY-------AALVST-EEPGNLHEALKNKHWKLAMDKEFEAL 597 Query: 257 LKNKTWTLVPP 289 + NKTW LVPP Sbjct: 598 VHNKTWHLVPP 608