BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043709
         (289 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]            63   3e-08
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...    62   6e-08
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    61   8e-08
emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]    59   4e-07
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat...    59   5e-07

>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
          Length = 1087

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 28/70 (40%), Positives = 44/70 (62%)
 Frame = +2

Query: 77  TRHRDGIHRPLVRNDGTVQYPLPCALAAQLTSSIEEPTCYSQAIRFPEWRQAMTDKFNAL 256
           TR +  I +PL R DGT+++ +        + S +EPTC+  A+    W++AM +++NAL
Sbjct: 609 TRLQSNIRKPLTRTDGTIRWGM-------YSGSDKEPTCFDDALADENWKKAMDEEYNAL 661

Query: 257 LKNKTWTLVP 286
           +KN TW LVP
Sbjct: 662 IKNNTWHLVP 671


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 900

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/75 (42%), Positives = 42/75 (56%)
 Frame = +2

Query: 65  QTMVTRHRDGIHRPLVRNDGTVQYPLPCALAAQLTSSIEEPTCYSQAIRFPEWRQAMTDK 244
           Q  VTR + G+HRP    DGTV+Y           +   EP+   +A+    W+QAM  +
Sbjct: 352 QRPVTRSQHGVHRPKKYTDGTVRYGC--------LTETGEPSSLQEALSSANWKQAMDKE 403

Query: 245 FNALLKNKTWTLVPP 289
           F+ALL NKTW LVPP
Sbjct: 404 FSALLHNKTWHLVPP 418


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/71 (45%), Positives = 41/71 (57%)
 Frame = +2

Query: 77   TRHRDGIHRPLVRNDGTVQYPLPCALAAQLTSSIEEPTCYSQAIRFPEWRQAMTDKFNAL 256
            TR + GI +P    DGTV+Y           + I EP+  S+A+  P+WR AM  +F AL
Sbjct: 896  TRLQHGISKPKQFTDGTVRY-------GNAAARITEPSSVSEALADPQWRAAMEAEFQAL 948

Query: 257  LKNKTWTLVPP 289
             KN TWTLVPP
Sbjct: 949  QKNNTWTLVPP 959


>emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]
          Length = 1112

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/72 (41%), Positives = 44/72 (61%)
 Frame = +2

Query: 71  MVTRHRDGIHRPLVRNDGTVQYPLPCALAAQLTSSIEEPTCYSQAIRFPEWRQAMTDKFN 250
           +VTR +  IH+P+ + +          L A L     EPT  +QA++ P+WRQAM+ +F+
Sbjct: 590 IVTRSKHNIHKPIQKXN----------LTAXLQQPTLEPTTVTQALKDPKWRQAMSAEFD 639

Query: 251 ALLKNKTWTLVP 286
           ALL+N TW LVP
Sbjct: 640 ALLRNGTWDLVP 651


>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
           gi|31430072|gb|AAP52036.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1058

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 32/71 (45%), Positives = 42/71 (59%)
 Frame = +2

Query: 77  TRHRDGIHRPLVRNDGTVQYPLPCALAAQLTSSIEEPTCYSQAIRFPEWRQAMTDKFNAL 256
           TR R GIH+P    DGT++Y       A L S+ EEP    +A++   W+ AM  +F AL
Sbjct: 546 TRSRHGIHKPKKYTDGTIRY-------AALVST-EEPGNLHEALKNKHWKLAMDKEFEAL 597

Query: 257 LKNKTWTLVPP 289
           + NKTW LVPP
Sbjct: 598 VHNKTWHLVPP 608