BLASTX nr result

ID: Coptis25_contig00043684 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043684
         (209 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274489.2| PREDICTED: LOW QUALITY PROTEIN: midasin-like...    60   1e-07
ref|XP_002327931.1| predicted protein [Populus trichocarpa] gi|2...    58   9e-07

>ref|XP_002274489.2| PREDICTED: LOW QUALITY PROTEIN: midasin-like [Vitis vinifera]
          Length = 5286

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
 Frame = -1

Query: 206  ITQVERYIDEYCSLSLE--LEDIVLERKDLVSKWFKLLSSMYGNPTAASASAYADSWKSG 33
            + QVE Y++EYCSL LE  +E  + ER+D+++ W  +LSSM   P++ SAS Y + WK  
Sbjct: 2055 VGQVECYVNEYCSLQLESSMEAFISERRDMITGWLAVLSSMDCGPSSTSASTYMEDWKCN 2114

Query: 32   SGS 24
              S
Sbjct: 2115 RSS 2117


>ref|XP_002327931.1| predicted protein [Populus trichocarpa] gi|222837340|gb|EEE75719.1|
            predicted protein [Populus trichocarpa]
          Length = 5317

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
 Frame = -1

Query: 206  ITQVERYIDEYCSLSLELEDIVL--ERKDLVSKWFKLLSSMYGNPTAASASAYADSWKS 36
            I QVERY+ EYC+L LE   +    ER DL++KW   LS+M  +  A+S S + ++W+S
Sbjct: 2114 IAQVERYVSEYCNLQLEFSKVAFMSERTDLITKWLAFLSTMNSSSMASSTSIHLENWES 2172


Top