BLASTX nr result
ID: Coptis25_contig00043612
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00043612
(323 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002315278.1| predicted protein [Populus trichocarpa] gi|2... 68 7e-15
ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selag... 57 1e-13
ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Sela... 57 1e-13
ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata] g... 70 2e-13
ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat... 67 2e-13
>ref|XP_002315278.1| predicted protein [Populus trichocarpa] gi|222864318|gb|EEF01449.1|
predicted protein [Populus trichocarpa]
Length = 728
Score = 68.2 bits (165), Expect(2) = 7e-15
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = +3
Query: 132 FVNKGRWRRVWSFFKEMERRGCLPNVVTFNTLIDFNCKMGKIDEAFKLFELMRKRGLHAN 311
FV KG+ V ++ME GCLP++VT+NTLI ++CK+GK+DEAF+L + M ++GL +
Sbjct: 382 FVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMD 441
Query: 312 LIT 320
+T
Sbjct: 442 DVT 444
Score = 37.0 bits (84), Expect(2) = 7e-15
Identities = 17/52 (32%), Positives = 34/52 (65%)
Frame = +2
Query: 2 YNSLLDAMFKSRGSVQMVEELYREMIKCGVSPNVYSFNILIRGFCKQGEMEK 157
YN+L++ F+ GS + +L EM G+ PN ++N++++ F K+G+M++
Sbjct: 340 YNTLINGCFE-HGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDE 390
>ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein
SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 57.4 bits (137), Expect(2) = 1e-13
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +3
Query: 162 WSFFKEMERRGCLPNVVTFNTLIDFNCKMGKIDEAFKLFELMRKRGLHANLITY 323
W F +M C+PN VTFNTLI CK G +++A KLF M K G A ++TY
Sbjct: 263 WEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTY 316
Score = 43.5 bits (101), Expect(2) = 1e-13
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +2
Query: 2 YNSLLDAMFKSRGSVQMVEELYREMIKCGVSPNVYSFNILIRGFCKQGEMEKGLEFF 172
YN L+D K G + L +E++K G PNV++++I+I +CK ++E+ E F
Sbjct: 211 YNVLMDGYCKI-GQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVF 266
>ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein
SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 57.4 bits (137), Expect(2) = 1e-13
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +3
Query: 162 WSFFKEMERRGCLPNVVTFNTLIDFNCKMGKIDEAFKLFELMRKRGLHANLITY 323
W F +M C+PN VTFNTLI CK G +++A KLF M K G A ++TY
Sbjct: 214 WEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTY 267
Score = 43.5 bits (101), Expect(2) = 1e-13
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +2
Query: 2 YNSLLDAMFKSRGSVQMVEELYREMIKCGVSPNVYSFNILIRGFCKQGEMEKGLEFF 172
YN L+D K G + L +E++K G PNV++++I+I +CK ++E+ E F
Sbjct: 162 YNVLMDGYCKI-GQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVF 217
Score = 42.0 bits (97), Expect(2) = 2e-06
Identities = 16/47 (34%), Positives = 32/47 (68%)
Frame = +2
Query: 2 YNSLLDAMFKSRGSVQMVEELYREMIKCGVSPNVYSFNILIRGFCKQ 142
YN+L+D++ K RG V +L+ ++ G++P + ++N LI+GF ++
Sbjct: 267 YNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFSER 313
Score = 34.7 bits (78), Expect(2) = 2e-06
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 180 MERRGCLPNVVTFNTLIDFNCKMGKIDEAFKLFELM 287
M GC P+V+T+N LI C ++++A +LF M
Sbjct: 324 MHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGM 359
>ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata
subsp. lyrata]
Length = 747
Score = 65.1 bits (157), Expect(2) = 2e-13
Identities = 27/59 (45%), Positives = 43/59 (72%)
Frame = +2
Query: 2 YNSLLDAMFKSRGSVQMVEELYREMIKCGVSPNVYSFNILIRGFCKQGEMEKGLEFF*R 178
YN++LDA +S+ ++ E +++EM++ VSPNV+++NILIRGFC G ++ L FF R
Sbjct: 172 YNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDR 230
Score = 35.4 bits (80), Expect(2) = 2e-13
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +3
Query: 162 WSFFKEMERRGCLPNVVTFNTLIDFNCKMGKIDEAFKLFELMRKRGLHANLITY 323
+ + M +G PN++++N +I+ C+ G++ E + M KRG + +TY
Sbjct: 260 FELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTY 313
Score = 70.5 bits (171), Expect = 1e-10
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = +3
Query: 129 GFVNKGRWRRVWSFFKEMERRGCLPNVVTFNTLIDFNCKMGKIDEAFKLFELMRKRGLHA 308
GF G FF ME++GCLPNVVT+NTLID CK+ KID+ F+L M +GL
Sbjct: 214 GFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEP 273
Query: 309 NLITY 323
NLI+Y
Sbjct: 274 NLISY 278
Score = 40.8 bits (94), Expect(2) = 1e-07
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +3
Query: 144 GRWRRVWSFFKEMERRGCLPNVVTFNTLIDFNCKMGKIDEAFKLFELMRKRGLHANLITY 323
G R F +M RG PN T+ TL+D + G ++EA+++ + M G +++TY
Sbjct: 359 GNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTY 418
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 2 YNSLLDAMFKSRGSVQMVEELYREMIKCGVSPNVYSFNILIRGFCKQGEMEKGLEF 169
YN+L+ K G+ ++ EM++ G+SP+V ++ LI CK G M + EF
Sbjct: 313 YNTLIKGYCKE-GNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEF 367
>ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 67.0 bits (162), Expect(2) = 2e-13
Identities = 31/64 (48%), Positives = 41/64 (64%)
Frame = +3
Query: 132 FVNKGRWRRVWSFFKEMERRGCLPNVVTFNTLIDFNCKMGKIDEAFKLFELMRKRGLHAN 311
F GR R +S+F EM+R G + NVVTF+T +D CK G + EA KLF MR +G+ N
Sbjct: 274 FCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPN 333
Query: 312 LITY 323
+TY
Sbjct: 334 EVTY 337
Score = 33.1 bits (74), Expect(2) = 2e-13
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 2 YNSLLDAMFKSRGSVQMVEELYREMIKCGVSPNVYSFNILIRGFCKQGEMEK 157
+N ++D + K G + L M G SP+V ++N LI G+ K GE+E+
Sbjct: 197 FNIMIDFLCKE-GDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEE 247
Score = 57.4 bits (137), Expect = 1e-06
Identities = 27/89 (30%), Positives = 48/89 (53%)
Frame = +3
Query: 57 RSCIGR*LSVGCPRMCIVLIF*LGGFVNKGRWRRVWSFFKEMERRGCLPNVVTFNTLIDF 236
R+ + R ++GC + + G+ G V EM GC P+VVT+N L++
Sbjct: 214 RALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNC 273
Query: 237 NCKMGKIDEAFKLFELMRKRGLHANLITY 323
CK G+++ A+ F M++ G+ AN++T+
Sbjct: 274 FCKFGRMERAYSYFAEMKREGVMANVVTF 302