BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043605
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_740696.1| NADH-plastoquinone oxidoreductase subunit 2 [Na...   155   2e-36
gb|AAQ64534.1| NADH dehydrogenase subunit B [Berberis aquifolium]     155   2e-36
ref|YP_398373.1| NADH dehydrogenase subunit 2 [Lactuca sativa] g...   154   6e-36
ref|YP_005089619.1| ndhB gene product (chloroplast) [Silene lati...   154   6e-36
dbj|BAD93472.1| NADH dehydrogenase subunit 2 [Silene latifolia]       154   6e-36

>ref|YP_740696.1| NADH-plastoquinone oxidoreductase subunit 2 [Nandina domestica]
           gi|114330030|ref|YP_740711.1| NADH-plastoquinone
           oxidoreductase subunit 2 [Nandina domestica]
           gi|288558944|sp|P0CC95.1|NU2C2_NANDO RecName:
           Full=NAD(P)H-quinone oxidoreductase subunit 2 B,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase,
           subunit 2 B; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 2 B
           gi|288561953|sp|P0CC94.1|NU2C1_NANDO RecName:
           Full=NAD(P)H-quinone oxidoreductase subunit 2 A,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase,
           subunit 2 A; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 2 A gi|114054517|gb|ABI49910.1|
           NADH-plastoquinone oxidoreductase subunit 2 [Nandina
           domestica] gi|114054532|gb|ABI49925.1|
           NADH-plastoquinone oxidoreductase subunit 2 [Nandina
           domestica]
          Length = 511

 Score =  155 bits (393), Expect = 2e-36
 Identities = 76/88 (86%), Positives = 78/88 (88%)
 Frame = -2

Query: 266 ECXXXXXXXXXLMIDSTSDQKDIPWLYFISSTSLIMSMATLLFRWREEPMISFSGNFQTN 87
           EC         LMIDSTSDQKDIPWLYFISSTSL+MS+A LLFRWREEPMISFSGNFQTN
Sbjct: 35  ECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSIAALLFRWREEPMISFSGNFQTN 94

Query: 86  NFNEIFQFLILLCSTLCIPLSVEYIECT 3
           NFNEIFQFLILLCSTLCIPLSVEYIECT
Sbjct: 95  NFNEIFQFLILLCSTLCIPLSVEYIECT 122


>gb|AAQ64534.1| NADH dehydrogenase subunit B [Berberis aquifolium]
          Length = 478

 Score =  155 bits (393), Expect = 2e-36
 Identities = 77/88 (87%), Positives = 79/88 (89%)
 Frame = -2

Query: 266 ECXXXXXXXXXLMIDSTSDQKDIPWLYFISSTSLIMSMATLLFRWREEPMISFSGNFQTN 87
           EC         LMIDSTSDQKDIPWLYFISSTSL+MS+A LLFRWREEPMISFSGNFQTN
Sbjct: 35  ECIXIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSIAALLFRWREEPMISFSGNFQTN 94

Query: 86  NFNEIFQFLILLCSTLCIPLSVEYIECT 3
           NFNEIFQFLILLCSTLCIPLSVEYIECT
Sbjct: 95  NFNEIFQFLILLCSTLCIPLSVEYIECT 122


>ref|YP_398373.1| NADH dehydrogenase subunit 2 [Lactuca sativa]
           gi|81176310|ref|YP_398387.1| NADH dehydrogenase subunit
           2 [Lactuca sativa] gi|288558936|sp|P0CC81.1|NU2C2_LACSA
           RecName: Full=NAD(P)H-quinone oxidoreductase subunit 2
           B, chloroplastic; AltName: Full=NAD(P)H dehydrogenase,
           subunit 2 B; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 2 B
           gi|288561945|sp|P0CC80.1|NU2C1_LACSA RecName:
           Full=NAD(P)H-quinone oxidoreductase subunit 2 A,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase,
           subunit 2 A; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 2 A gi|78675214|dbj|BAE47640.1|
           NAD(P)H-quinone oxidoreductase chain 2 [Lactuca sativa]
           gi|78675228|dbj|BAE47654.1| NAD(P)H-quinone
           oxidoreductase chain 2 [Lactuca sativa]
           gi|88657027|gb|ABD47277.1| NADH-plastoquinone
           oxidoreductase subunit 2 [Lactuca sativa]
           gi|88657045|gb|ABD47295.1| NADH-plastoquinone
           oxidoreductase subunit 2 [Lactuca sativa]
          Length = 510

 Score =  154 bits (390), Expect = 6e-36
 Identities = 75/88 (85%), Positives = 78/88 (88%)
 Frame = -2

Query: 266 ECXXXXXXXXXLMIDSTSDQKDIPWLYFISSTSLIMSMATLLFRWREEPMISFSGNFQTN 87
           EC         LMIDSTSDQKDIPWLYFISSTSL+MS+ +LLFRWREEPMISFSGNFQTN
Sbjct: 35  ECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITSLLFRWREEPMISFSGNFQTN 94

Query: 86  NFNEIFQFLILLCSTLCIPLSVEYIECT 3
           NFNEIFQFLILLCSTLCIPLSVEYIECT
Sbjct: 95  NFNEIFQFLILLCSTLCIPLSVEYIECT 122


>ref|YP_005089619.1| ndhB gene product (chloroplast) [Silene latifolia]
           gi|374250008|ref|YP_005089634.1| ndhB gene product
           (chloroplast) [Silene latifolia]
           gi|114158574|sp|Q589A5.2|NU2C_SILLA RecName:
           Full=NAD(P)H-quinone oxidoreductase subunit 2,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase,
           subunit 2; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit 2 gi|329755564|gb|AEC04127.1|
           NADH-plastoquinone oxidoreductase subunit 2
           (chloroplast) [Silene latifolia]
           gi|329755579|gb|AEC04142.1| NADH-plastoquinone
           oxidoreductase subunit 2 (chloroplast) [Silene
           latifolia]
          Length = 510

 Score =  154 bits (390), Expect = 6e-36
 Identities = 75/88 (85%), Positives = 78/88 (88%)
 Frame = -2

Query: 266 ECXXXXXXXXXLMIDSTSDQKDIPWLYFISSTSLIMSMATLLFRWREEPMISFSGNFQTN 87
           EC         L+IDSTSDQKDIPWLYFISSTSL+MS+ TLLFRWREEPMISFSGNFQTN
Sbjct: 35  ECILIFGLILLLIIDSTSDQKDIPWLYFISSTSLVMSITTLLFRWREEPMISFSGNFQTN 94

Query: 86  NFNEIFQFLILLCSTLCIPLSVEYIECT 3
           NFNEIFQFLILLCSTLCIPLSVEYIECT
Sbjct: 95  NFNEIFQFLILLCSTLCIPLSVEYIECT 122


>dbj|BAD93472.1| NADH dehydrogenase subunit 2 [Silene latifolia]
          Length = 449

 Score =  154 bits (390), Expect = 6e-36
 Identities = 75/88 (85%), Positives = 78/88 (88%)
 Frame = -2

Query: 266 ECXXXXXXXXXLMIDSTSDQKDIPWLYFISSTSLIMSMATLLFRWREEPMISFSGNFQTN 87
           EC         L+IDSTSDQKDIPWLYFISSTSL+MS+ TLLFRWREEPMISFSGNFQTN
Sbjct: 35  ECILIFGLILLLIIDSTSDQKDIPWLYFISSTSLVMSITTLLFRWREEPMISFSGNFQTN 94

Query: 86  NFNEIFQFLILLCSTLCIPLSVEYIECT 3
           NFNEIFQFLILLCSTLCIPLSVEYIECT
Sbjct: 95  NFNEIFQFLILLCSTLCIPLSVEYIECT 122