BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043580
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    80   1e-13
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    78   8e-13
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    78   8e-13
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    75   5e-12
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    75   7e-12

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 41/99 (41%), Positives = 57/99 (57%)
 Frame = +2

Query: 8    LGVKDCLPLIERTTSRISNWNNRVLSHAGRL*LIHSVLSSFHTYWSRTFVLPKTVLDKVN 187
            L   DCLPL+E+   RI +W +R LS+AGRL LI SVL S   +W   F LP+  + ++ 
Sbjct: 781  LSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELE 840

Query: 188  KICNRVLWSGPSLTKCLHKASHELLRCSKDERGLNMIDL 304
            K+C+  LWSG  +     K S  ++   KDE GL +  L
Sbjct: 841  KMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSL 879


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
 Frame = +2

Query: 20   DCLPLIERTTSRISNWNNRVLSHAGRL*LIHSVLSSFHTYWSRTFVLPKTVLDKVNKICN 199
            DCLPL+E+  SRIS+W NR LS+AGRL L++SV+SS   +W   F LP+  + ++ +I  
Sbjct: 1040 DCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISA 1099

Query: 200  RVLWSGPSLTKCLHKAS---HELLRCSKDERGLNMIDL 304
              LWSG  L    HKA    H++ +  K E GL +  L
Sbjct: 1100 AFLWSGTDLNP--HKAKVAWHDVCK-PKSEGGLGLRSL 1134


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 41/92 (44%), Positives = 55/92 (59%)
 Frame = +2

Query: 20   DCLPLIERTTSRISNWNNRVLSHAGRL*LIHSVLSSFHTYWSRTFVLPKTVLDKVNKICN 199
            D LPL+E+  +RI++W NR LS AGRL LI SVLSS   +W   F LPK  L ++ K+ +
Sbjct: 932  DYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFS 991

Query: 200  RVLWSGPSLTKCLHKASHELLRCSKDERGLNM 295
              LWSGP L     K +   +   K+E GL +
Sbjct: 992  AFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGL 1023


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 41/96 (42%), Positives = 53/96 (55%)
 Frame = +2

Query: 17  KDCLPLIERTTSRISNWNNRVLSHAGRL*LIHSVLSSFHTYWSRTFVLPKTVLDKVNKIC 196
           +D  PL E+  +RI  W +R LS AGRL LI SVL S   +W   F LP   L ++N IC
Sbjct: 189 EDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLKEINSIC 248

Query: 197 NRVLWSGPSLTKCLHKASHELLRCSKDERGLNMIDL 304
           +  LWSGP L +   K S + +   K E GL +  L
Sbjct: 249 SAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSL 284


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 40/95 (42%), Positives = 53/95 (55%)
 Frame = +2

Query: 20  DCLPLIERTTSRISNWNNRVLSHAGRL*LIHSVLSSFHTYWSRTFVLPKTVLDKVNKICN 199
           D +PLIER   RIS W  R LS AGRL LI SV+ S   +W   F LP   + +++ +C+
Sbjct: 5   DYIPLIERIRERISCWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPNACIKEIDGLCS 64

Query: 200 RVLWSGPSLTKCLHKASHELLRCSKDERGLNMIDL 304
             LWSGP L +   K S   +   K+E GL +  L
Sbjct: 65  AFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSL 99