BLASTX nr result
ID: Coptis25_contig00043517
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00043517 (353 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002515531.1| pentatricopeptide repeat-containing protein,... 120 9e-26 ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containi... 119 3e-25 ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containi... 102 4e-20 ref|XP_003588753.1| Pentatricopeptide repeat-containing protein ... 100 2e-19 ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containi... 92 4e-17 >ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 397 Score = 120 bits (302), Expect = 9e-26 Identities = 58/87 (66%), Positives = 71/87 (81%) Frame = +2 Query: 86 NLRAAEQNCLTLLQTCNSFTKLTQIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDYAASI 265 N R AEQ CL+LLQ CN+F+KLTQIH +LK GL NNPLVLTK++STSS+L++IDYA+S Sbjct: 27 NKREAEQRCLSLLQDCNTFSKLTQIHTQILKLGLSNNPLVLTKYTSTSSNLHAIDYASSF 86 Query: 266 ILSNNANSHLYDTFLFNTIIRDYAQTN 346 I S ++ LYDTFLFNTIIR YA +N Sbjct: 87 IFSPESDKRLYDTFLFNTIIRAYAHSN 113 >ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis sativus] gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis sativus] Length = 606 Score = 119 bits (298), Expect = 3e-25 Identities = 63/112 (56%), Positives = 76/112 (67%), Gaps = 3/112 (2%) Frame = +2 Query: 26 MQFPSITKRLIHTFNT---NPEINLRAAEQNCLTLLQTCNSFTKLTQIHAHLLKSGLQNN 196 MQ +L+ T N + N RA EQNCL LLQ CN+ KLTQIH H+LK GL NN Sbjct: 1 MQSQFTKPKLLRTINNVLASSTPNPRAPEQNCLALLQACNALPKLTQIHTHILKLGLHNN 60 Query: 197 PLVLTKFSSTSSDLNSIDYAASIILSNNANSHLYDTFLFNTIIRDYAQTNGS 352 PLVLTKF+S SS +++ DYAAS + S A++ LYD FLFNT+IR YAQT S Sbjct: 61 PLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHS 112 >ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Vitis vinifera] gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera] Length = 583 Score = 102 bits (253), Expect = 4e-20 Identities = 49/90 (54%), Positives = 68/90 (75%) Frame = +2 Query: 83 INLRAAEQNCLTLLQTCNSFTKLTQIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDYAAS 262 +N RA EQ CL +LQ CN+ KL Q+H H++K G QNNPLVLTKF+S SS+L++I YA S Sbjct: 1 MNHRAVEQPCLDILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMS 60 Query: 263 IILSNNANSHLYDTFLFNTIIRDYAQTNGS 352 ++ S ++ +YD FLF+TIIR YA+++ S Sbjct: 61 LVFSVE-DARVYDAFLFSTIIRAYAESSQS 89 >ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 600 Score = 100 bits (248), Expect = 2e-19 Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 5/92 (5%) Frame = +2 Query: 92 RAAEQNCLTLLQT-CNSFTKLTQIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDYAASII 268 R EQ LTLL + CN+ +KLTQIHA +LK+GLQNNPL+LTKF+STSS+LNSI YA S + Sbjct: 14 RLTEQTILTLLNSHCNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFL 73 Query: 269 L----SNNANSHLYDTFLFNTIIRDYAQTNGS 352 + + + YD FLFNT+IR Y+QT S Sbjct: 74 FPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDS 105 >ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Glycine max] Length = 705 Score = 92.0 bits (227), Expect = 4e-17 Identities = 46/89 (51%), Positives = 64/89 (71%), Gaps = 2/89 (2%) Frame = +2 Query: 92 RAAEQNCLTLLQTCNSFTKLTQIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDYAASIIL 271 R AEQ L+LL TC++ T TQIH+ +LK GL +NPLVLTKF++TSS N++ YA+S++ Sbjct: 119 RVAEQTILSLLTTCDTLTTFTQIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLF 178 Query: 272 SNNANS--HLYDTFLFNTIIRDYAQTNGS 352 N+ + +D FLFNT+IR +AQT S Sbjct: 179 PNDQTTPPPSHDAFLFNTLIRAFAQTTHS 207