BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043517
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515531.1| pentatricopeptide repeat-containing protein,...   120   9e-26
ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25
ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containi...   102   4e-20
ref|XP_003588753.1| Pentatricopeptide repeat-containing protein ...   100   2e-19
ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containi...    92   4e-17

>ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545475|gb|EEF46980.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 397

 Score =  120 bits (302), Expect = 9e-26
 Identities = 58/87 (66%), Positives = 71/87 (81%)
 Frame = +2

Query: 86  NLRAAEQNCLTLLQTCNSFTKLTQIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDYAASI 265
           N R AEQ CL+LLQ CN+F+KLTQIH  +LK GL NNPLVLTK++STSS+L++IDYA+S 
Sbjct: 27  NKREAEQRCLSLLQDCNTFSKLTQIHTQILKLGLSNNPLVLTKYTSTSSNLHAIDYASSF 86

Query: 266 ILSNNANSHLYDTFLFNTIIRDYAQTN 346
           I S  ++  LYDTFLFNTIIR YA +N
Sbjct: 87  IFSPESDKRLYDTFLFNTIIRAYAHSN 113


>ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
           gi|449529652|ref|XP_004171812.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  119 bits (298), Expect = 3e-25
 Identities = 63/112 (56%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
 Frame = +2

Query: 26  MQFPSITKRLIHTFNT---NPEINLRAAEQNCLTLLQTCNSFTKLTQIHAHLLKSGLQNN 196
           MQ      +L+ T N    +   N RA EQNCL LLQ CN+  KLTQIH H+LK GL NN
Sbjct: 1   MQSQFTKPKLLRTINNVLASSTPNPRAPEQNCLALLQACNALPKLTQIHTHILKLGLHNN 60

Query: 197 PLVLTKFSSTSSDLNSIDYAASIILSNNANSHLYDTFLFNTIIRDYAQTNGS 352
           PLVLTKF+S SS +++ DYAAS + S  A++ LYD FLFNT+IR YAQT  S
Sbjct: 61  PLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHS 112


>ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
           gi|296082021|emb|CBI21026.3| unnamed protein product
           [Vitis vinifera]
          Length = 583

 Score =  102 bits (253), Expect = 4e-20
 Identities = 49/90 (54%), Positives = 68/90 (75%)
 Frame = +2

Query: 83  INLRAAEQNCLTLLQTCNSFTKLTQIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDYAAS 262
           +N RA EQ CL +LQ CN+  KL Q+H H++K G QNNPLVLTKF+S SS+L++I YA S
Sbjct: 1   MNHRAVEQPCLDILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMS 60

Query: 263 IILSNNANSHLYDTFLFNTIIRDYAQTNGS 352
           ++ S   ++ +YD FLF+TIIR YA+++ S
Sbjct: 61  LVFSVE-DARVYDAFLFSTIIRAYAESSQS 89


>ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355477801|gb|AES59004.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  100 bits (248), Expect = 2e-19
 Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 5/92 (5%)
 Frame = +2

Query: 92  RAAEQNCLTLLQT-CNSFTKLTQIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDYAASII 268
           R  EQ  LTLL + CN+ +KLTQIHA +LK+GLQNNPL+LTKF+STSS+LNSI YA S +
Sbjct: 14  RLTEQTILTLLNSHCNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFL 73

Query: 269 L----SNNANSHLYDTFLFNTIIRDYAQTNGS 352
                + +  +  YD FLFNT+IR Y+QT  S
Sbjct: 74  FPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDS 105


>ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 46/89 (51%), Positives = 64/89 (71%), Gaps = 2/89 (2%)
 Frame = +2

Query: 92  RAAEQNCLTLLQTCNSFTKLTQIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDYAASIIL 271
           R AEQ  L+LL TC++ T  TQIH+ +LK GL +NPLVLTKF++TSS  N++ YA+S++ 
Sbjct: 119 RVAEQTILSLLTTCDTLTTFTQIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLF 178

Query: 272 SNNANS--HLYDTFLFNTIIRDYAQTNGS 352
            N+  +    +D FLFNT+IR +AQT  S
Sbjct: 179 PNDQTTPPPSHDAFLFNTLIRAFAQTTHS 207