BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043505
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi...   126   2e-27
ref|XP_002527150.1| pentatricopeptide repeat-containing protein,...   121   7e-26
ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. l...   107   1e-21
ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containi...   105   4e-21

>ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
            [Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed
            protein product [Vitis vinifera]
          Length = 878

 Score =  126 bits (317), Expect = 2e-27
 Identities = 63/99 (63%), Positives = 73/99 (73%)
 Frame = -1

Query: 300  KEYQFDPASFMPLIDALGKNGNKHEADELAEMMMGMASDGRAMKRTHHKEPNKNTLNRGK 121
            K Y+FDPASFMP+ID LGK G KH+ADELAE MM MAS+G    +    E   N   R K
Sbjct: 766  KGYRFDPASFMPVIDGLGKRGKKHDADELAERMMDMASEGMVENKITRNESAFNRQKRNK 825

Query: 120  PQIDGNDWQTILNRDDGSGIAVKALKRVQKGWGQGIISS 4
                G+DWQTI++RDDGSG+A+KALKRVQKGWGQG ISS
Sbjct: 826  --FSGSDWQTIIHRDDGSGLALKALKRVQKGWGQGSISS 862


>ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223533489|gb|EEF35232.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 874

 Score =  121 bits (303), Expect = 7e-26
 Identities = 64/100 (64%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
 Frame = -1

Query: 300  KEYQFDPASFMPLIDALGKNGNKHEADELAEMMMGMASDGRAMKRTHHKEPN-KNTLNRG 124
            K YQFDPASFMP+ID  GK GNKH ADELAE MM MAS+     + +   PN K  + R 
Sbjct: 762  KGYQFDPASFMPVIDGFGKMGNKHVADELAERMMEMASESNKENKAY---PNVKGHILRN 818

Query: 123  KPQIDGNDWQTILNRDDGSGIAVKALKRVQKGWGQGIISS 4
            K +  GNDW  I++RDDGSGIA+KALKRVQKGWGQG ISS
Sbjct: 819  KNKDAGNDWPIIVHRDDGSGIALKALKRVQKGWGQGSISS 858


>ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
            gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 874

 Score =  107 bits (267), Expect = 1e-21
 Identities = 56/100 (56%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
 Frame = -1

Query: 300  KEYQFDPASFMPLIDALGKNGNKHEADELAEMMMGMASDGRAMKRTHHKEPNKNTLNRGK 121
            K Y FDPA+ MP+ID LGK GNK EA+  AE MM MAS G    +    +PN   +++ K
Sbjct: 762  KGYGFDPAALMPVIDGLGKMGNKKEANNFAEKMMEMASVGEVANKV---DPNATDIHQKK 818

Query: 120  P-QIDGNDWQTILNRDDGSGIAVKALKRVQKGWGQGIISS 4
              +  GN+WQ IL+RDDGSGIA+K+L RV+KGWGQG ISS
Sbjct: 819  HNKYSGNNWQNILHRDDGSGIALKSLSRVKKGWGQGDISS 858


>ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140-like
            [Glycine max]
          Length = 875

 Score =  107 bits (266), Expect = 1e-21
 Identities = 58/100 (58%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
 Frame = -1

Query: 300  KEYQFDPASFMPLIDALGKNGNKHEADELAEMMMGMASDGRAMKRTHHKEPNKNTLNRGK 121
            K Y FD ASFMP+ID L K GNK +ADELA+ MM +  + R + RT+    N+  +  GK
Sbjct: 763  KGYGFDHASFMPVIDGLSKRGNKRQADELAKRMMELELEDRPVDRTYS---NRKRVIPGK 819

Query: 120  PQIDG-NDWQTILNRDDGSGIAVKALKRVQKGWGQGIISS 4
               DG +DWQ I+NRD GSGIA+K LKRVQKGWGQG ISS
Sbjct: 820  LLKDGGSDWQDIINRDAGSGIALKTLKRVQKGWGQGSISS 859


>ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140-like
            [Cucumis sativus]
          Length = 875

 Score =  105 bits (262), Expect = 4e-21
 Identities = 56/99 (56%), Positives = 68/99 (68%)
 Frame = -1

Query: 300  KEYQFDPASFMPLIDALGKNGNKHEADELAEMMMGMASDGRAMKRTHHKEPNKNTLNRGK 121
            K+Y FDPASFMP+ID LGK G+KH ADE AE MM MAS+        ++  NKN   R  
Sbjct: 767  KQYSFDPASFMPVIDELGKRGSKHAADEFAERMMEMASE-----TDFNEHENKNIRGRLN 821

Query: 120  PQIDGNDWQTILNRDDGSGIAVKALKRVQKGWGQGIISS 4
               D +DWQ I++R+DGSGIA K LKRV KGWGQG I++
Sbjct: 822  NN-DESDWQKIVHRNDGSGIAQKTLKRVLKGWGQGSIAT 859