BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043447
         (513 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|2...   186   2e-45
ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containi...   182   2e-44
ref|XP_002512521.1| pentatricopeptide repeat-containing protein,...   182   3e-44
ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containi...   180   1e-43
emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]   174   9e-42

>ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|222871507|gb|EEF08638.1|
           predicted protein [Populus trichocarpa]
          Length = 665

 Score =  186 bits (472), Expect = 2e-45
 Identities = 90/168 (53%), Positives = 130/168 (77%), Gaps = 1/168 (0%)
 Frame = -2

Query: 503 YHLKASDLSPQTTTPTARLSQQTISNLLDSKGTKSLQHLKQIHTLIIRYGLFQDNYIAGS 324
           YHL + D S +    T++LSQ+TI +LL++K + SL HLKQ+H + +R G FQD+Y++G+
Sbjct: 9   YHLASKDFSTENKF-TSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGT 67

Query: 323 LVKCYSI-HFNSLDTALKAFNHVPRRHVFLWNSMIKGCIENNDVNQAILFFREMIVANSI 147
           LVKCY+  HF++L+ ALK F +VP  +VF++N +IKGC++NN+  +AI  + +M++A++ 
Sbjct: 68  LVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHAR 127

Query: 146 PNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGIQMY 3
           PNKFT+P+LFKACT + A  EG+Q+H HVIK GL GD HIRSAGIQMY
Sbjct: 128 PNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMY 175


>ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  182 bits (463), Expect = 2e-44
 Identities = 85/165 (51%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
 Frame = -2

Query: 494 KASDLSPQTTTPTARLSQQTISNLLDSKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVK 315
           K  D S +   PT++L Q+T+  L DSK   SLQ+L Q+H L++R G FQD+Y++G+L+K
Sbjct: 14  KPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLK 73

Query: 314 CYSI-HFNSLDTALKAFNHVPRRHVFLWNSMIKGCIENNDVNQAILFFREMIVANSIPNK 138
           CY+  HF++ D ALK F+ +P  +VF+WN +IKGC+ENN + +AI F+  M++ ++ PNK
Sbjct: 74  CYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVI-DARPNK 132

Query: 137 FTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGIQMY 3
           FT+P+LFKAC+ + A+ EG QIH HV+KHG+  D HI+SAGIQMY
Sbjct: 133 FTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMY 177


>ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548482|gb|EEF49973.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 422

 Score =  182 bits (461), Expect = 3e-44
 Identities = 86/161 (53%), Positives = 123/161 (76%), Gaps = 1/161 (0%)
 Frame = -2

Query: 482 LSPQTTTPTARLSQQTISNLLDSKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVKCYSI 303
           LSP    PT++L+Q+TI +LL+SK   S Q+LKQIH +I+R G F+D+Y++G+L+KCY+ 
Sbjct: 14  LSPAENKPTSKLTQKTILDLLNSKCNASFQYLKQIHAVILRSGHFEDHYVSGTLLKCYAN 73

Query: 302 -HFNSLDTALKAFNHVPRRHVFLWNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFP 126
            HF ++D A   F+HVP+ +VF++N +IK C++N++  +AI F+ +M+ AN+ PNKFT+P
Sbjct: 74  PHFKNIDLAFTVFDHVPKPNVFVYNIIIKACLDNDEPFKAICFYYKMVAANARPNKFTYP 133

Query: 125 SLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGIQMY 3
           SL KAC  + A  EG+Q+H HVIK GL GD HIRSAGIQMY
Sbjct: 134 SLLKACGVATAAKEGVQLHGHVIKQGLTGDVHIRSAGIQMY 174


>ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  180 bits (456), Expect = 1e-43
 Identities = 84/165 (50%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
 Frame = -2

Query: 494 KASDLSPQTTTPTARLSQQTISNLLDSKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVK 315
           K  D S +   PT++L Q+T+  L DSK   SLQ+L Q+H L++R G FQD+Y++G+L+K
Sbjct: 14  KPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLK 73

Query: 314 CYSI-HFNSLDTALKAFNHVPRRHVFLWNSMIKGCIENNDVNQAILFFREMIVANSIPNK 138
           CY+  HF++ D ALK F+ +P  +VF+WN +IKGC+ENN + +AI F+  M++ ++ PNK
Sbjct: 74  CYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVI-DARPNK 132

Query: 137 FTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGIQMY 3
           FT+P+LFKAC+ + A+ EG QIH HV+KHG+  D HI+SAGI MY
Sbjct: 133 FTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMY 177


>emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  174 bits (440), Expect = 9e-42
 Identities = 84/159 (52%), Positives = 120/159 (75%), Gaps = 4/159 (2%)
 Frame = -2

Query: 467 TTPTARLSQQTISNLLDSKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVKCYSI----H 300
           +T T++LS + I +LL+++ T SL HLKQ H LI+R G  QD+YIAGSLVK Y+      
Sbjct: 25  STETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNR 84

Query: 299 FNSLDTALKAFNHVPRRHVFLWNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSL 120
           + S +++L+ F+ V + +VFLWN MIK CIENN+  +AIL + EM+VA+S PNK+T+P++
Sbjct: 85  YLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAV 144

Query: 119 FKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGIQMY 3
            KAC+DSG + EG+Q+H H++KHGL GDGHI S+ I+MY
Sbjct: 145 LKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMY 183



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 29/96 (30%), Positives = 51/96 (53%)
 Frame = -2

Query: 290 LDTALKAFNHVPRRHVFLWNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKA 111
           ++ A + F+ +  R    W++MI G I+     +A+  F +M      P KF  PS+  A
Sbjct: 253 VEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSA 312

Query: 110 CTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGIQMY 3
           C + GAL +G  IH +  ++ +Q DG + ++ + MY
Sbjct: 313 CANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMY 348