BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043432
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containi...    62   5e-08
ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    58   9e-07
ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|2...    58   9e-07
emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]    58   9e-07

>ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Cucumis sativus]
           gi|449477884|ref|XP_004155152.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Cucumis sativus]
          Length = 479

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 34/74 (45%), Positives = 49/74 (66%)
 Frame = +2

Query: 215 SVVVKQKVFEETPERTNEQVVKVVSVLRNASLAVNGFLESSLGKLELTVNEEFMVRVIET 394
           +VVV   + EE  E     V ++ SVL      V+G  ESSL ++ LT+NE+F+++VIET
Sbjct: 13  NVVVSDGIGEEV-ESYGVNVEQLESVLSLIQSTVDGSFESSLDEMRLTLNEDFVLKVIET 71

Query: 395 PLVPGESLIRFFKW 436
           P + GE+LIRFF+W
Sbjct: 72  PHILGENLIRFFRW 85


>ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g02650, mitochondrial-like [Vitis vinifera]
          Length = 509

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/57 (50%), Positives = 43/57 (75%)
 Frame = +2

Query: 266 EQVVKVVSVLRNASLAVNGFLESSLGKLELTVNEEFMVRVIETPLVPGESLIRFFKW 436
           +++  V+S+L+++  AV G LESS   + L++NEEF+VRV+ETP VP  +LI FFKW
Sbjct: 118 DKLESVLSLLQSSGDAV-GSLESSFNAMGLSLNEEFVVRVLETPFVPANNLIGFFKW 173


>ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|222847615|gb|EEE85162.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/76 (43%), Positives = 51/76 (67%)
 Frame = +2

Query: 209 VGSVVVKQKVFEETPERTNEQVVKVVSVLRNASLAVNGFLESSLGKLELTVNEEFMVRVI 388
           V S+  ++ V  ET E   E++  V+ +L+++    +G LES+L    L ++EEF+V+V+
Sbjct: 11  VVSLAGEENVESETYEIDVEKLENVLHLLQSSD---DGSLESTLDTFSLDLHEEFVVKVL 67

Query: 389 ETPLVPGESLIRFFKW 436
           ETP V GE+LIRFFKW
Sbjct: 68  ETPHVLGENLIRFFKW 83


>emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]
          Length = 549

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/57 (50%), Positives = 43/57 (75%)
 Frame = +2

Query: 266 EQVVKVVSVLRNASLAVNGFLESSLGKLELTVNEEFMVRVIETPLVPGESLIRFFKW 436
           +++  V+S+L+++  AV G LESS   + L++NEEF+VRV+ETP VP  +LI FFKW
Sbjct: 118 DKLESVLSLLQSSGDAV-GSLESSFNAMGLSLNEEFVVRVLETPFVPANNLIGFFKW 173