BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043348
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containi...   177   6e-43
emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]   177   6e-43
gb|AFK46081.1| unknown [Lotus japonicus]                              176   2e-42
ref|XP_002884468.1| pentatricopeptide repeat-containing protein ...   167   1e-39
dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]           167   1e-39

>ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  177 bits (450), Expect = 6e-43
 Identities = 80/116 (68%), Positives = 101/116 (87%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LISSLC  G++++A+ VLKVM+++ +TPD+YSYDPLI+A CKEGRLDLAI ++DYM++ G
Sbjct: 318 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNG 377

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSGNR 350
           C PDIVNYNTIL ALCK G+ANQAL++F+KL  M CPPNVSSYNTMIS LW+ G+R
Sbjct: 378 CLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDR 433



 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 39/114 (34%), Positives = 69/114 (60%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LI +   +G + +A+ +L+ M+ RG+ PD Y+Y+ +I   CKEG ++ A +L+  + +KG
Sbjct: 213 LIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKG 272

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           C PD+++YN +L A    G  ++  KL  ++ +  C PN  +Y+ +IS L   G
Sbjct: 273 CKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFG 326



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 38/115 (33%), Positives = 69/115 (60%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           L+ +  + GK ++   ++  M  RG  P+  +Y  LI++ C+ GR+D AI +L  M+ K 
Sbjct: 283 LLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKE 342

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSGN 347
            TPD  +Y+ ++ ALCK G  + A+ + D + +  C P++ +YNT+++ L  +GN
Sbjct: 343 LTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 397



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 36/114 (31%), Positives = 62/114 (54%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +IS  C   ++E A  VL  M  RG  PD  +Y+ +I + C   +L LA+K+LD ++   
Sbjct: 143 VISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDN 202

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           C P ++ Y  ++ A    G  N+A+KL +++      P++ +YN +I G+   G
Sbjct: 203 CMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG 256



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 39/116 (33%), Positives = 67/116 (57%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +IS+L   G    A+ ++  M+ +GV PD  +Y+ LI+  C++G ++ AI LLD M   G
Sbjct: 423 MISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSG 482

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSGNR 350
             P +++YN +L  LCK    + A+ +F ++    C PN ++Y  +I G+  +G R
Sbjct: 483 FRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWR 538



 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 35/114 (30%), Positives = 65/114 (57%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +I  +C +G VE A +++  +  +G  PD  SY+ L+ AF  +G+ D   KL+  M ++G
Sbjct: 248 IIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 307

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           C P+ V Y+ ++ +LC+ G  ++A+ +   +   +  P+  SY+ +IS L   G
Sbjct: 308 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEG 361



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 40/114 (35%), Positives = 62/114 (54%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +I SLC+  K+  A+ VL  ++     P   +Y  LI A   EG ++ A+KLL+ M+ +G
Sbjct: 178 MIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG 237

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
             PD+  YN I+  +CK G   +A +L   L +  C P+V SYN ++    N G
Sbjct: 238 LLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQG 291



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 36/107 (33%), Positives = 62/107 (57%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LI    +   +E A  V++++ +    PD ++Y+ +I+ FCK  R++ A ++L+ M  +G
Sbjct: 109 LIKGFFNFKNIEKASRVMEIL-ESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARG 167

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMI 323
             PDIV YN ++G+LC       ALK+ D+L   +C P V +Y  +I
Sbjct: 168 FLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILI 214



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 32/110 (29%), Positives = 60/110 (54%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           ++++LC +G    A+++   +   G  P+  SY+ +I+A    G    A+ ++  M++KG
Sbjct: 388 ILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKG 447

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGL 332
             PD + YN+++  LC+ G   +A+ L D +      P V SYN ++ GL
Sbjct: 448 VDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGL 497



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 33/95 (34%), Positives = 51/95 (53%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LIS LC DG VE+A+ +L  M   G  P   SY+ ++   CK  R+D AI +   M+ KG
Sbjct: 458 LISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKG 517

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMD 287
           C P+   Y  ++  +   G   +A++L + L + D
Sbjct: 518 CRPNETTYILLIEGIGFAGWRTEAMELANSLFSRD 552


>emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  177 bits (450), Expect = 6e-43
 Identities = 80/116 (68%), Positives = 101/116 (87%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LISSLC  G++++A+ VLKVM+++ +TPD+YSYDPLI+A CKEGRLDLAI ++DYM++ G
Sbjct: 328 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNG 387

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSGNR 350
           C PDIVNYNTIL ALCK G+ANQAL++F+KL  M CPPNVSSYNTMIS LW+ G+R
Sbjct: 388 CLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDR 443



 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 39/114 (34%), Positives = 69/114 (60%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LI +   +G + +A+ +L+ M+ RG+ PD Y+Y+ +I   CKEG ++ A +L+  + +KG
Sbjct: 223 LIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKG 282

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           C PD+++YN +L A    G  ++  KL  ++ +  C PN  +Y+ +IS L   G
Sbjct: 283 CEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFG 336



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 38/115 (33%), Positives = 69/115 (60%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           L+ +  + GK ++   ++  M  RG  P+  +Y  LI++ C+ GR+D AI +L  M+ K 
Sbjct: 293 LLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKE 352

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSGN 347
            TPD  +Y+ ++ ALCK G  + A+ + D + +  C P++ +YNT+++ L  +GN
Sbjct: 353 LTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 407



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 38/116 (32%), Positives = 67/116 (57%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +IS+L   G    A+ ++  M+ +G+ PD  +Y+ LI+  C++G ++ AI LLD M   G
Sbjct: 433 MISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSG 492

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSGNR 350
             P +++YN +L  LCK    + A+ +F ++    C PN ++Y  +I G+  +G R
Sbjct: 493 FRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWR 548



 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 35/114 (30%), Positives = 65/114 (57%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +I  +C +G VE A +++  +  +G  PD  SY+ L+ AF  +G+ D   KL+  M ++G
Sbjct: 258 IIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 317

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           C P+ V Y+ ++ +LC+ G  ++A+ +   +   +  P+  SY+ +IS L   G
Sbjct: 318 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEG 371



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 40/114 (35%), Positives = 62/114 (54%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +I SLC+  K+  A+ VL  ++     P   +Y  LI A   EG ++ A+KLL+ M+ +G
Sbjct: 188 MIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG 247

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
             PD+  YN I+  +CK G   +A +L   L +  C P+V SYN ++    N G
Sbjct: 248 LLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQG 301



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 35/114 (30%), Positives = 61/114 (53%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +IS  C   ++E A  VL  M  RG  PD  +Y+ +I + C   +L LA+ +LD ++   
Sbjct: 153 VISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDN 212

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           C P ++ Y  ++ A    G  N+A+KL +++      P++ +YN +I G+   G
Sbjct: 213 CMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG 266



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 32/110 (29%), Positives = 60/110 (54%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           ++++LC +G    A+++   +   G  P+  SY+ +I+A    G    A+ ++  M++KG
Sbjct: 398 ILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKG 457

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGL 332
             PD + YN+++  LC+ G   +A+ L D +      P V SYN ++ GL
Sbjct: 458 IDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGL 507



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 34/107 (31%), Positives = 61/107 (57%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LI    +   +E A  V++++ +    PD ++Y+ +I+ FCK  +++ A ++L+ M  +G
Sbjct: 119 LIKGFFNFKNIEKASRVMEIL-ESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARG 177

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMI 323
             PDIV YN ++G+LC       AL + D+L   +C P V +Y  +I
Sbjct: 178 FLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILI 224



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 33/95 (34%), Positives = 51/95 (53%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LIS LC DG VE+A+ +L  M   G  P   SY+ ++   CK  R+D AI +   M+ KG
Sbjct: 468 LISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKG 527

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMD 287
           C P+   Y  ++  +   G   +A++L + L + D
Sbjct: 528 CRPNETTYILLIEGIGFAGWRTEAMELANSLFSRD 562


>gb|AFK46081.1| unknown [Lotus japonicus]
          Length = 327

 Score =  176 bits (446), Expect = 2e-42
 Identities = 79/116 (68%), Positives = 99/116 (85%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LISSLC DGKVE+AV +LKVM ++G+TPD+YSYDPLI AFCKE R+DLAI+ L+ M++ G
Sbjct: 136 LISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDG 195

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSGNR 350
           C PDIVNYNTIL  LCK G A++ALK+F+KLG + CPPNVSSYNT+ S LW+SG++
Sbjct: 196 CLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHK 251



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 34/114 (29%), Positives = 67/114 (58%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           L+  L +  K ED   ++  M+ +G  P+  +Y  LI++ C++G+++ A+ LL  M  +G
Sbjct: 101 LLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQG 160

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
            TPD  +Y+ ++ A CK    + A++  + + +  C P++ +YNT++S L  +G
Sbjct: 161 LTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTILSTLCKNG 214



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 34/114 (29%), Positives = 61/114 (53%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LI +    G V+D + +L  M++ G+ PD + ++ ++   C+EG +D A + + Y+  KG
Sbjct: 31  LIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYISAKG 90

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
             PD+++Y+ +L  L          KL   + +  C PNV +Y+ +IS L   G
Sbjct: 91  YAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDG 144



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 28/108 (25%), Positives = 59/108 (54%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           ++  +C +G V+ A + ++ +  +G  PD  SY  L+     + + +   KL+  M++KG
Sbjct: 66  VVGGMCREGLVDRAFEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKG 125

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMIS 326
           C P++V Y+ ++ +LC+ G   +A+ L   +      P+  SY+ +I+
Sbjct: 126 CEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIA 173



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/81 (32%), Positives = 45/81 (55%)
 Frame = +3

Query: 96  SYDPLITAFCKEGRLDLAIKLLDYMVTKGCTPDIVNYNTILGALCKTGSANQALKLFDKL 275
           +Y  LI A   +G +D  +KLLD M+  G  PD+  +N ++G +C+ G  ++A +    +
Sbjct: 27  TYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYI 86

Query: 276 GTMDCPPNVSSYNTMISGLWN 338
                 P+V SY+ ++ GL N
Sbjct: 87  SAKGYAPDVISYSILLRGLLN 107


>ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330308|gb|EFH60727.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 598

 Score =  167 bits (422), Expect = 1e-39
 Identities = 72/116 (62%), Positives = 98/116 (84%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LI++LC DGK+E+A+++LK+M ++G+TPD+YSYDPLI AFC+EGRLD+AI+ L+ M++ G
Sbjct: 335 LITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG 394

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSGNR 350
           C PDIVNYNT+L  LCK G A+QAL++F KLG + C PN SSYNTM S LW+SG++
Sbjct: 395 CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDK 450



 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 41/114 (35%), Positives = 69/114 (60%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LI +   +G V++A+ +L  M+ RG+ PD ++Y+ +I   CKEG +D A +++  +  KG
Sbjct: 230 LIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKG 289

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           C PD+++YN +L AL   G   +  KL  K+ +  C PNV +Y+ +I+ L   G
Sbjct: 290 CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDG 343



 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 38/114 (33%), Positives = 69/114 (60%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LI+  C   +++DA  VL  M  +  +PD+ +Y+ +I + C  G+LDLA+K+LD +++  
Sbjct: 160 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDN 219

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           C P ++ Y  ++ A    G  ++ALKL D++ +    P++ +YNT+I G+   G
Sbjct: 220 CQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEG 273



 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 44/114 (38%), Positives = 66/114 (57%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +I SLC  GK++ A+ VL  ++     P   +Y  LI A   EG +D A+KLLD M+++G
Sbjct: 195 MIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRG 254

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
             PD+  YNTI+  +CK G  ++A ++   L    C P+V SYN ++  L N G
Sbjct: 255 LKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQG 308



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 40/104 (38%), Positives = 62/104 (59%)
 Frame = +3

Query: 33  VEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKGCTPDIVNYNT 212
           V  AV V++++   G  PD ++Y+ LI  FCK  R+D A ++LD M +K  +PD V YN 
Sbjct: 136 VPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNI 194

Query: 213 ILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           ++G+LC  G  + ALK+ D+L + +C P V +Y  +I      G
Sbjct: 195 MIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEG 238



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 35/116 (30%), Positives = 60/116 (51%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           + S+L   G    A+ ++  M+  G+ PD  +Y+ +I+  C+EG +D A +LL  M +  
Sbjct: 440 MFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCE 499

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSGNR 350
             P +V YN +L   CK      A+ + D +    C PN ++Y  +I G+  +G R
Sbjct: 500 FHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYR 555



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 30/114 (26%), Positives = 61/114 (53%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +I  +C +G V+ A ++++ +  +G  PD  SY+ L+ A   +G+ +   KL+  M ++ 
Sbjct: 265 IIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 324

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           C P++V Y+ ++  LC+ G   +A+ L   +      P+  SY+ +I+     G
Sbjct: 325 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREG 378



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 29/91 (31%), Positives = 49/91 (53%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +IS LC +G V+ A ++L  M      P   +Y+ ++  FCK  R++ AI +LD MV  G
Sbjct: 475 MISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNG 534

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKL 275
           C P+   Y  ++  +   G   +A++L + L
Sbjct: 535 CRPNETTYTVLIEGIGFAGYRAEAMELANDL 565


>dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  167 bits (422), Expect = 1e-39
 Identities = 72/116 (62%), Positives = 98/116 (84%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LI++LC DGK+E+A+++LK+M ++G+TPD+YSYDPLI AFC+EGRLD+AI+ L+ M++ G
Sbjct: 339 LITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG 398

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSGNR 350
           C PDIVNYNT+L  LCK G A+QAL++F KLG + C PN SSYNTM S LW+SG++
Sbjct: 399 CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDK 454



 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 37/114 (32%), Positives = 69/114 (60%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LI+  C   +++DA  VL  M  +  +PD+ +Y+ +I + C  G+LDLA+K+L+ +++  
Sbjct: 164 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN 223

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           C P ++ Y  ++ A    G  ++ALKL D++ +    P++ +YNT+I G+   G
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG 277



 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 39/114 (34%), Positives = 68/114 (59%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           LI +   +G V++A+ ++  M+ RG+ PD ++Y+ +I   CKEG +D A +++  +  KG
Sbjct: 234 LIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG 293

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
             PD+++YN +L AL   G   +  KL  K+ +  C PNV +Y+ +I+ L   G
Sbjct: 294 SEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDG 347



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 42/114 (36%), Positives = 65/114 (57%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +I SLC  GK++ A+ VL  ++     P   +Y  LI A   EG +D A+KL+D M+++G
Sbjct: 199 MIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRG 258

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
             PD+  YNTI+  +CK G  ++A ++   L      P+V SYN ++  L N G
Sbjct: 259 LKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQG 312



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 38/104 (36%), Positives = 62/104 (59%)
 Frame = +3

Query: 33  VEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKGCTPDIVNYNT 212
           +  AV V++++   G  PD ++Y+ LI  FCK  R+D A ++LD M +K  +PD V YN 
Sbjct: 140 IPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNI 198

Query: 213 ILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           ++G+LC  G  + ALK+ ++L + +C P V +Y  +I      G
Sbjct: 199 MIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEG 242



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 35/116 (30%), Positives = 60/116 (51%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           + S+L   G    A+ ++  MM  G+ PD  +Y+ +I+  C+EG +D A +LL  M +  
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSGNR 350
             P +V YN +L   CK      A+ + + +    C PN ++Y  +I G+  +G R
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYR 559



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 30/114 (26%), Positives = 61/114 (53%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +I  +C +G V+ A ++++ +  +G  PD  SY+ L+ A   +G+ +   KL+  M ++ 
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYNTMISGLWNSG 344
           C P++V Y+ ++  LC+ G   +A+ L   +      P+  SY+ +I+     G
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREG 382



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 31/104 (29%), Positives = 56/104 (53%)
 Frame = +3

Query: 3   LISSLCHDGKVEDAVDVLKVMMDRGVTPDSYSYDPLITAFCKEGRLDLAIKLLDYMVTKG 182
           +IS LC +G V++A ++L  M      P   +Y+ ++  FCK  R++ AI +L+ MV  G
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNG 538

Query: 183 CTPDIVNYNTILGALCKTGSANQALKLFDKLGTMDCPPNVSSYN 314
           C P+   Y  ++  +   G   +A++L + L  +D    +S Y+
Sbjct: 539 CRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDA---ISEYS 579