BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043346
         (245 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago ...    94   1e-17
ref|XP_002518010.1| pentatricopeptide repeat-containing protein,...    91   1e-16
ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat...    90   2e-16
ref|XP_002306009.1| predicted protein [Populus trichocarpa] gi|2...    88   8e-16
emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]    87   1e-15

>ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
           gi|355491760|gb|AES72963.1| hypothetical protein
           MTR_3g098230 [Medicago truncatula]
          Length = 867

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 48/84 (57%), Positives = 60/84 (71%), Gaps = 3/84 (3%)
 Frame = +3

Query: 3   HIQFFELVSQMLEEGIRPDSITILAVLHVVPS---VKLVKETHGYSLRAALLLNCQEPTV 173
           H +F  L+  ML+  IRPDS+TIL ++H   S   VK VKE HGYS+R+  LL    PTV
Sbjct: 431 HSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKVKEIHGYSIRSGSLLCATAPTV 490

Query: 174 GNAILDAYAKCGNMEYALKTFESL 245
           GNAILDAY+KCGN+EYA K F++L
Sbjct: 491 GNAILDAYSKCGNIEYANKMFQNL 514



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
 Frame = +3

Query: 9   QFFELVSQMLEEGIRPDSITILAVLHV---VPSVKLVKETHGYSLRAALLLNCQEPTVGN 179
           Q  EL  ++  +G++PD +TI++++ V   + SV L+++ HGY +R++     ++  +  
Sbjct: 569 QALELFLKLQTQGMKPDVVTIMSLIPVCTQMASVHLLRQCHGYIIRSSF----EDLHLKG 624

Query: 180 AILDAYAKCGNMEYALKTFES 242
            +LDAYAKCG + YA K F+S
Sbjct: 625 TLLDAYAKCGIIGYAYKIFQS 645


>ref|XP_002518010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542992|gb|EEF44528.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 824

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 49/82 (59%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
 Frame = +3

Query: 9   QFFELVSQMLEEGIRPDSITILAVLHV---VPSVKLVKETHGYSLRAALLLNCQEPTVGN 179
           QFF+L+  M  EGIRPDSITIL +LH    V  V  VKETH YSLR  LL +  EPT  N
Sbjct: 370 QFFKLLHWMHTEGIRPDSITILTILHFCANVLKVDKVKETHCYSLRCGLLQSDFEPTTRN 429

Query: 180 AILDAYAKCGNMEYALKTFESL 245
           A+LD YAKC N+EYA K F++L
Sbjct: 430 AMLDTYAKCSNVEYAFKVFQTL 451



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
 Frame = +3

Query: 9   QFFELVSQMLEEGIRPDSITILAVLHV---VPSVKLVKETHGYSLRAALLLNCQEPTVGN 179
           Q F L  ++   G++PD++TI+++L       SV L+K+ HGY +RA       +  +  
Sbjct: 506 QAFSLFRELQARGMKPDAVTIISLLPSCAQTASVHLMKQCHGYVIRACF----DDAHLEG 561

Query: 180 AILDAYAKCGNMEYALKTFES 242
           A+LD YAKCG++ YA K F S
Sbjct: 562 ALLDLYAKCGDLGYAFKLFHS 582


>ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Glycine max]
          Length = 875

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 3/84 (3%)
 Frame = +3

Query: 3   HIQFFELVSQMLEEGIRPDSITILAVLHVVPS---VKLVKETHGYSLRAALLLNCQEPTV 173
           H +F  L+  ML+  IRPDS+TILA++ +  S   V+ VKE H YS+R   LL+   PTV
Sbjct: 437 HSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIRTGSLLSNTAPTV 496

Query: 174 GNAILDAYAKCGNMEYALKTFESL 245
           GNAILDAY+KCGNMEYA K F++L
Sbjct: 497 GNAILDAYSKCGNMEYANKMFQNL 520


>ref|XP_002306009.1| predicted protein [Populus trichocarpa] gi|222848973|gb|EEE86520.1|
           predicted protein [Populus trichocarpa]
          Length = 870

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 48/83 (57%), Positives = 58/83 (69%), Gaps = 5/83 (6%)
 Frame = +3

Query: 12  FFELVSQMLEEGIRPDSITILAVLHVVPSV---KLVKETHGYSLRAALLLNC--QEPTVG 176
           F EL+  ML EG  PDS+TIL+V+H   +V     VKE H YS+R  LL +    EPT+G
Sbjct: 424 FLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIG 483

Query: 177 NAILDAYAKCGNMEYALKTFESL 245
           NAILDAYAKCGN+EYA K F+SL
Sbjct: 484 NAILDAYAKCGNIEYASKVFQSL 506



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
 Frame = +3

Query: 9   QFFELVSQMLEEGIRPDSITILAVLHV---VPSVKLVKETHGYSLRAALLLNCQEPTVGN 179
           Q   L  ++   GI+PD++TI+++L     + SV+L+K+ HGY++R+       +  +  
Sbjct: 561 QALGLFHELQAHGIKPDAVTIMSLLPACAEMASVQLIKQCHGYAIRSCF----GDLHLDG 616

Query: 180 AILDAYAKCGNMEYALKTFE 239
           A+ D YAKCG++ YA K F+
Sbjct: 617 ALQDVYAKCGSIGYAFKLFQ 636


>emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
          Length = 1849

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 46/78 (58%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
 Frame = +3

Query: 21   LVSQMLEEGIRPDSITILAVLH---VVPSVKLVKETHGYSLRAALLLNCQEPTVGNAILD 191
            L+  ML EGIRPDSITIL ++     V  VK VKETH YS+R  LL     PT+GN +LD
Sbjct: 1370 LLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAXPTLGNGMLD 1429

Query: 192  AYAKCGNMEYALKTFESL 245
            AYAKCGNM+YA+  F SL
Sbjct: 1430 AYAKCGNMKYAVNIFGSL 1447