BLASTX nr result

ID: Coptis25_contig00043322 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043322
         (271 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...   155   2e-36
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...   144   6e-33
ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi...   138   4e-31
ref|NP_189568.1| pentatricopeptide repeat-containing protein [Ar...   137   9e-31
ref|XP_002875497.1| pentatricopeptide repeat-containing protein ...   136   2e-30

>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  155 bits (393), Expect = 2e-36
 Identities = 75/90 (83%), Positives = 79/90 (87%)
 Frame = -1

Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92
           CGL GV  ARK+F  M+ERD VSWNSMI GLVK GELGEARRLFDEMPERDTVSWNT+LD
Sbjct: 163 CGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILD 222

Query: 91  GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2
           GY KAGEM+AAFELF KMP RNVVSWSTMV
Sbjct: 223 GYVKAGEMNAAFELFEKMPARNVVSWSTMV 252



 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 44/88 (50%), Positives = 64/88 (72%)
 Frame = -1

Query: 265 LGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGY 86
           +G +  AR+LF  M ERD VSWN+++ G VK+GE+  A  LF++MP R+ VSW+T++ GY
Sbjct: 196 VGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGY 255

Query: 85  AKAGEMSAAFELFGKMPERNVVSWSTMV 2
           +KAG+M  A  LF KMP +N+V W+ M+
Sbjct: 256 SKAGDMDMARILFDKMPVKNLVPWTIMI 283



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 31/77 (40%), Positives = 49/77 (63%)
 Frame = -1

Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83
           G ++ A +LF  M  R+VVSW++M+ G  K+G++  AR LFD+MP ++ V W  ++ GYA
Sbjct: 228 GEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYA 287

Query: 82  KAGEMSAAFELFGKMPE 32
           + G    A  L+ +M E
Sbjct: 288 EKGLAKDAINLYNQMEE 304


>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score =  144 bits (364), Expect = 6e-33
 Identities = 69/90 (76%), Positives = 76/90 (84%)
 Frame = -1

Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92
           CGL GV+ A KLF  M E+D+VSWNSMI GLVK+G+LG AR+LFDEM ERD VSWNT+LD
Sbjct: 169 CGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILD 228

Query: 91  GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2
           GY KAGEMS AF LF KMPERNVVSWSTMV
Sbjct: 229 GYVKAGEMSQAFNLFEKMPERNVVSWSTMV 258



 Score =  100 bits (248), Expect = 2e-19
 Identities = 44/87 (50%), Positives = 65/87 (74%)
 Frame = -1

Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83
           G +  ARKLF  M+ERD VSWN+++ G VK+GE+ +A  LF++MPER+ VSW+T++ GY 
Sbjct: 203 GDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYC 262

Query: 82  KAGEMSAAFELFGKMPERNVVSWSTMV 2
           K G+M  A  LF KMP +N+V+W+ ++
Sbjct: 263 KTGDMEMARMLFDKMPFKNLVTWTIII 289



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 31/75 (41%), Positives = 49/75 (65%)
 Frame = -1

Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83
           G +  A  LF  M ER+VVSW++M+SG  K+G++  AR LFD+MP ++ V+W  ++ G+A
Sbjct: 234 GEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFA 293

Query: 82  KAGEMSAAFELFGKM 38
           + G    A  L+ +M
Sbjct: 294 EKGLAKEATTLYNQM 308


>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  138 bits (348), Expect = 4e-31
 Identities = 66/90 (73%), Positives = 74/90 (82%)
 Frame = -1

Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92
           CG  G+D A  LF AM ERDVV+WNSMI GLV+ GEL  A +LFDEMPERD VSWNT+LD
Sbjct: 168 CGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLD 227

Query: 91  GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2
           GYAKAGEM  AFELF +MP+RN+VSWSTMV
Sbjct: 228 GYAKAGEMDRAFELFERMPQRNIVSWSTMV 257



 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 42/87 (48%), Positives = 62/87 (71%)
 Frame = -1

Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83
           G ++ A KLF  M ERD+VSWN+M+ G  K+GE+  A  LF+ MP+R+ VSW+T++ GY+
Sbjct: 202 GELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYS 261

Query: 82  KAGEMSAAFELFGKMPERNVVSWSTMV 2
           K G+M  A  LF + P +NVV W+T++
Sbjct: 262 KGGDMDMARVLFDRCPAKNVVLWTTII 288



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 34/77 (44%), Positives = 51/77 (66%)
 Frame = -1

Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83
           G +D A +LF  M +R++VSW++M+ G  K G++  AR LFD  P ++ V W T++ GYA
Sbjct: 233 GEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYA 292

Query: 82  KAGEMSAAFELFGKMPE 32
           + G +  A EL+GKM E
Sbjct: 293 EKGFVREATELYGKMEE 309


>ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g29230 gi|9293916|dbj|BAB01819.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332644032|gb|AEE77553.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  137 bits (345), Expect = 9e-31
 Identities = 67/90 (74%), Positives = 74/90 (82%)
 Frame = -1

Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92
           CG  GV  A KLF  MSERD VSWNSM+ GLVK+GEL +ARRLFDEMP+RD +SWNT+LD
Sbjct: 165 CGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLD 224

Query: 91  GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2
           GYA+  EMS AFELF KMPERN VSWSTMV
Sbjct: 225 GYARCREMSKAFELFEKMPERNTVSWSTMV 254


>ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297321335|gb|EFH51756.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 629

 Score =  136 bits (342), Expect = 2e-30
 Identities = 66/90 (73%), Positives = 74/90 (82%)
 Frame = -1

Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92
           CG  GV  A KLF  MSERD VSWNSM+ GLVK+GEL +AR+LFDEMP+RD +SWNT+LD
Sbjct: 165 CGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLD 224

Query: 91  GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2
           GYA+  EMS AFELF KMPERN VSWSTMV
Sbjct: 225 GYARCREMSRAFELFEKMPERNTVSWSTMV 254


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