BLASTX nr result
ID: Coptis25_contig00043322
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00043322 (271 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi... 155 2e-36 ref|XP_002532904.1| pentatricopeptide repeat-containing protein,... 144 6e-33 ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi... 138 4e-31 ref|NP_189568.1| pentatricopeptide repeat-containing protein [Ar... 137 9e-31 ref|XP_002875497.1| pentatricopeptide repeat-containing protein ... 136 2e-30 >ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Vitis vinifera] Length = 594 Score = 155 bits (393), Expect = 2e-36 Identities = 75/90 (83%), Positives = 79/90 (87%) Frame = -1 Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92 CGL GV ARK+F M+ERD VSWNSMI GLVK GELGEARRLFDEMPERDTVSWNT+LD Sbjct: 163 CGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILD 222 Query: 91 GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2 GY KAGEM+AAFELF KMP RNVVSWSTMV Sbjct: 223 GYVKAGEMNAAFELFEKMPARNVVSWSTMV 252 Score = 96.3 bits (238), Expect = 2e-18 Identities = 44/88 (50%), Positives = 64/88 (72%) Frame = -1 Query: 265 LGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGY 86 +G + AR+LF M ERD VSWN+++ G VK+GE+ A LF++MP R+ VSW+T++ GY Sbjct: 196 VGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGY 255 Query: 85 AKAGEMSAAFELFGKMPERNVVSWSTMV 2 +KAG+M A LF KMP +N+V W+ M+ Sbjct: 256 SKAGDMDMARILFDKMPVKNLVPWTIMI 283 Score = 66.2 bits (160), Expect = 3e-09 Identities = 31/77 (40%), Positives = 49/77 (63%) Frame = -1 Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83 G ++ A +LF M R+VVSW++M+ G K+G++ AR LFD+MP ++ V W ++ GYA Sbjct: 228 GEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYA 287 Query: 82 KAGEMSAAFELFGKMPE 32 + G A L+ +M E Sbjct: 288 EKGLAKDAINLYNQMEE 304 >ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 604 Score = 144 bits (364), Expect = 6e-33 Identities = 69/90 (76%), Positives = 76/90 (84%) Frame = -1 Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92 CGL GV+ A KLF M E+D+VSWNSMI GLVK+G+LG AR+LFDEM ERD VSWNT+LD Sbjct: 169 CGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILD 228 Query: 91 GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2 GY KAGEMS AF LF KMPERNVVSWSTMV Sbjct: 229 GYVKAGEMSQAFNLFEKMPERNVVSWSTMV 258 Score = 100 bits (248), Expect = 2e-19 Identities = 44/87 (50%), Positives = 65/87 (74%) Frame = -1 Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83 G + ARKLF M+ERD VSWN+++ G VK+GE+ +A LF++MPER+ VSW+T++ GY Sbjct: 203 GDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYC 262 Query: 82 KAGEMSAAFELFGKMPERNVVSWSTMV 2 K G+M A LF KMP +N+V+W+ ++ Sbjct: 263 KTGDMEMARMLFDKMPFKNLVTWTIII 289 Score = 67.4 bits (163), Expect = 1e-09 Identities = 31/75 (41%), Positives = 49/75 (65%) Frame = -1 Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83 G + A LF M ER+VVSW++M+SG K+G++ AR LFD+MP ++ V+W ++ G+A Sbjct: 234 GEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFA 293 Query: 82 KAGEMSAAFELFGKM 38 + G A L+ +M Sbjct: 294 EKGLAKEATTLYNQM 308 >ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Glycine max] Length = 604 Score = 138 bits (348), Expect = 4e-31 Identities = 66/90 (73%), Positives = 74/90 (82%) Frame = -1 Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92 CG G+D A LF AM ERDVV+WNSMI GLV+ GEL A +LFDEMPERD VSWNT+LD Sbjct: 168 CGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLD 227 Query: 91 GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2 GYAKAGEM AFELF +MP+RN+VSWSTMV Sbjct: 228 GYAKAGEMDRAFELFERMPQRNIVSWSTMV 257 Score = 93.2 bits (230), Expect = 2e-17 Identities = 42/87 (48%), Positives = 62/87 (71%) Frame = -1 Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83 G ++ A KLF M ERD+VSWN+M+ G K+GE+ A LF+ MP+R+ VSW+T++ GY+ Sbjct: 202 GELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYS 261 Query: 82 KAGEMSAAFELFGKMPERNVVSWSTMV 2 K G+M A LF + P +NVV W+T++ Sbjct: 262 KGGDMDMARVLFDRCPAKNVVLWTTII 288 Score = 73.6 bits (179), Expect = 2e-11 Identities = 34/77 (44%), Positives = 51/77 (66%) Frame = -1 Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83 G +D A +LF M +R++VSW++M+ G K G++ AR LFD P ++ V W T++ GYA Sbjct: 233 GEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYA 292 Query: 82 KAGEMSAAFELFGKMPE 32 + G + A EL+GKM E Sbjct: 293 EKGFVREATELYGKMEE 309 >ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana] gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 600 Score = 137 bits (345), Expect = 9e-31 Identities = 67/90 (74%), Positives = 74/90 (82%) Frame = -1 Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92 CG GV A KLF MSERD VSWNSM+ GLVK+GEL +ARRLFDEMP+RD +SWNT+LD Sbjct: 165 CGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLD 224 Query: 91 GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2 GYA+ EMS AFELF KMPERN VSWSTMV Sbjct: 225 GYARCREMSKAFELFEKMPERNTVSWSTMV 254 >ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 629 Score = 136 bits (342), Expect = 2e-30 Identities = 66/90 (73%), Positives = 74/90 (82%) Frame = -1 Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92 CG GV A KLF MSERD VSWNSM+ GLVK+GEL +AR+LFDEMP+RD +SWNT+LD Sbjct: 165 CGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLD 224 Query: 91 GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2 GYA+ EMS AFELF KMPERN VSWSTMV Sbjct: 225 GYARCREMSRAFELFEKMPERNTVSWSTMV 254