BLASTX nr result
ID: Coptis25_contig00043322
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00043322
(271 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi... 155 2e-36
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,... 144 6e-33
ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi... 138 4e-31
ref|NP_189568.1| pentatricopeptide repeat-containing protein [Ar... 137 9e-31
ref|XP_002875497.1| pentatricopeptide repeat-containing protein ... 136 2e-30
>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 155 bits (393), Expect = 2e-36
Identities = 75/90 (83%), Positives = 79/90 (87%)
Frame = -1
Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92
CGL GV ARK+F M+ERD VSWNSMI GLVK GELGEARRLFDEMPERDTVSWNT+LD
Sbjct: 163 CGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILD 222
Query: 91 GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2
GY KAGEM+AAFELF KMP RNVVSWSTMV
Sbjct: 223 GYVKAGEMNAAFELFEKMPARNVVSWSTMV 252
Score = 96.3 bits (238), Expect = 2e-18
Identities = 44/88 (50%), Positives = 64/88 (72%)
Frame = -1
Query: 265 LGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGY 86
+G + AR+LF M ERD VSWN+++ G VK+GE+ A LF++MP R+ VSW+T++ GY
Sbjct: 196 VGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGY 255
Query: 85 AKAGEMSAAFELFGKMPERNVVSWSTMV 2
+KAG+M A LF KMP +N+V W+ M+
Sbjct: 256 SKAGDMDMARILFDKMPVKNLVPWTIMI 283
Score = 66.2 bits (160), Expect = 3e-09
Identities = 31/77 (40%), Positives = 49/77 (63%)
Frame = -1
Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83
G ++ A +LF M R+VVSW++M+ G K+G++ AR LFD+MP ++ V W ++ GYA
Sbjct: 228 GEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYA 287
Query: 82 KAGEMSAAFELFGKMPE 32
+ G A L+ +M E
Sbjct: 288 EKGLAKDAINLYNQMEE 304
>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 604
Score = 144 bits (364), Expect = 6e-33
Identities = 69/90 (76%), Positives = 76/90 (84%)
Frame = -1
Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92
CGL GV+ A KLF M E+D+VSWNSMI GLVK+G+LG AR+LFDEM ERD VSWNT+LD
Sbjct: 169 CGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILD 228
Query: 91 GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2
GY KAGEMS AF LF KMPERNVVSWSTMV
Sbjct: 229 GYVKAGEMSQAFNLFEKMPERNVVSWSTMV 258
Score = 100 bits (248), Expect = 2e-19
Identities = 44/87 (50%), Positives = 65/87 (74%)
Frame = -1
Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83
G + ARKLF M+ERD VSWN+++ G VK+GE+ +A LF++MPER+ VSW+T++ GY
Sbjct: 203 GDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYC 262
Query: 82 KAGEMSAAFELFGKMPERNVVSWSTMV 2
K G+M A LF KMP +N+V+W+ ++
Sbjct: 263 KTGDMEMARMLFDKMPFKNLVTWTIII 289
Score = 67.4 bits (163), Expect = 1e-09
Identities = 31/75 (41%), Positives = 49/75 (65%)
Frame = -1
Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83
G + A LF M ER+VVSW++M+SG K+G++ AR LFD+MP ++ V+W ++ G+A
Sbjct: 234 GEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFA 293
Query: 82 KAGEMSAAFELFGKM 38
+ G A L+ +M
Sbjct: 294 EKGLAKEATTLYNQM 308
>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 138 bits (348), Expect = 4e-31
Identities = 66/90 (73%), Positives = 74/90 (82%)
Frame = -1
Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92
CG G+D A LF AM ERDVV+WNSMI GLV+ GEL A +LFDEMPERD VSWNT+LD
Sbjct: 168 CGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLD 227
Query: 91 GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2
GYAKAGEM AFELF +MP+RN+VSWSTMV
Sbjct: 228 GYAKAGEMDRAFELFERMPQRNIVSWSTMV 257
Score = 93.2 bits (230), Expect = 2e-17
Identities = 42/87 (48%), Positives = 62/87 (71%)
Frame = -1
Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83
G ++ A KLF M ERD+VSWN+M+ G K+GE+ A LF+ MP+R+ VSW+T++ GY+
Sbjct: 202 GELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYS 261
Query: 82 KAGEMSAAFELFGKMPERNVVSWSTMV 2
K G+M A LF + P +NVV W+T++
Sbjct: 262 KGGDMDMARVLFDRCPAKNVVLWTTII 288
Score = 73.6 bits (179), Expect = 2e-11
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = -1
Query: 262 GGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLDGYA 83
G +D A +LF M +R++VSW++M+ G K G++ AR LFD P ++ V W T++ GYA
Sbjct: 233 GEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYA 292
Query: 82 KAGEMSAAFELFGKMPE 32
+ G + A EL+GKM E
Sbjct: 293 EKGFVREATELYGKMEE 309
>ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g29230 gi|9293916|dbj|BAB01819.1| unnamed protein
product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 137 bits (345), Expect = 9e-31
Identities = 67/90 (74%), Positives = 74/90 (82%)
Frame = -1
Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92
CG GV A KLF MSERD VSWNSM+ GLVK+GEL +ARRLFDEMP+RD +SWNT+LD
Sbjct: 165 CGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLD 224
Query: 91 GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2
GYA+ EMS AFELF KMPERN VSWSTMV
Sbjct: 225 GYARCREMSKAFELFEKMPERNTVSWSTMV 254
>ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297321335|gb|EFH51756.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 629
Score = 136 bits (342), Expect = 2e-30
Identities = 66/90 (73%), Positives = 74/90 (82%)
Frame = -1
Query: 271 CGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDTVSWNTVLD 92
CG GV A KLF MSERD VSWNSM+ GLVK+GEL +AR+LFDEMP+RD +SWNT+LD
Sbjct: 165 CGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLD 224
Query: 91 GYAKAGEMSAAFELFGKMPERNVVSWSTMV 2
GYA+ EMS AFELF KMPERN VSWSTMV
Sbjct: 225 GYARCREMSRAFELFEKMPERNTVSWSTMV 254