BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043292
         (243 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36552.3| unnamed protein product [Vitis vinifera]              105   5e-21
ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containi...   105   5e-21
ref|XP_003610281.1| Pentatricopeptide repeat-containing protein ...    97   1e-18
ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containi...    91   1e-16
ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    91   1e-16

>emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  105 bits (261), Expect = 5e-21
 Identities = 55/79 (69%), Positives = 60/79 (75%)
 Frame = -2

Query: 239 GLHNDLVTVTKLADKLSDFGLINQARLLFSTVSKPDLFLYNVLIRGHSRNKSPSLSISYY 60
           GLHNDLVTVTKL  KLS    I+QA LLFST+  PDLFLYNVLIR  S N SPS ++S Y
Sbjct: 37  GLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLY 96

Query: 59  THLRIHNTHLTPDNFTYAF 3
           THLR  +T L PDNFTYAF
Sbjct: 97  THLR-KSTPLEPDNFTYAF 114


>ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  105 bits (261), Expect = 5e-21
 Identities = 55/79 (69%), Positives = 60/79 (75%)
 Frame = -2

Query: 239 GLHNDLVTVTKLADKLSDFGLINQARLLFSTVSKPDLFLYNVLIRGHSRNKSPSLSISYY 60
           GLHNDLVTVTKL  KLS    I+QA LLFST+  PDLFLYNVLIR  S N SPS ++S Y
Sbjct: 37  GLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLY 96

Query: 59  THLRIHNTHLTPDNFTYAF 3
           THLR  +T L PDNFTYAF
Sbjct: 97  THLR-KSTPLEPDNFTYAF 114


>ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355511336|gb|AES92478.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 783

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 50/79 (63%), Positives = 57/79 (72%)
 Frame = -2

Query: 239 GLHNDLVTVTKLADKLSDFGLINQARLLFSTVSKPDLFLYNVLIRGHSRNKSPSLSISYY 60
           G   DL T+TKL  KL DF     AR LF +V KPD+FL+NVL+RG S N SPS SIS Y
Sbjct: 39  GYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLY 98

Query: 59  THLRIHNTHLTPDNFTYAF 3
           THLR  NT+L+PDNFTYAF
Sbjct: 99  THLR-RNTNLSPDNFTYAF 116


>ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 47/79 (59%), Positives = 54/79 (68%)
 Frame = -2

Query: 239 GLHNDLVTVTKLADKLSDFGLINQARLLFSTVSKPDLFLYNVLIRGHSRNKSPSLSISYY 60
           G+H DL ++TKL  K  D G +   R LF+ VSKPDLFL+NVLIRG S N  P  SI  Y
Sbjct: 41  GIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLY 100

Query: 59  THLRIHNTHLTPDNFTYAF 3
           THLR   T+L PDNFTYAF
Sbjct: 101 THLR-KKTNLRPDNFTYAF 118


>ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 47/79 (59%), Positives = 54/79 (68%)
 Frame = -2

Query: 239 GLHNDLVTVTKLADKLSDFGLINQARLLFSTVSKPDLFLYNVLIRGHSRNKSPSLSISYY 60
           G+H DL ++TKL  K  D G +   R LF+ VSKPDLFL+NVLIRG S N  P  SI  Y
Sbjct: 41  GIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLY 100

Query: 59  THLRIHNTHLTPDNFTYAF 3
           THLR   T+L PDNFTYAF
Sbjct: 101 THLR-KXTNLRPDNFTYAF 118