BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043251
         (285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK39810.1| unknown [Lotus japonicus] gi|388512023|gb|AFK4407...   150   1e-34
gb|ABI14811.1| chloroplast photosystem II light-inducible protei...   149   2e-34
ref|XP_002529952.1| Photosystem II 10 kDa polypeptide, chloropla...   144   6e-33
gb|AAQ24852.1| 10 kDa photosystem II polypeptide [Trifolium prat...   144   7e-33
gb|ABQ41961.1| photosystem II 10 kDa polypeptide [Sonneratia alba]    144   1e-32

>gb|AFK39810.1| unknown [Lotus japonicus] gi|388512023|gb|AFK44073.1| unknown
           [Lotus japonicus]
          Length = 139

 Score =  150 bits (378), Expect = 1e-34
 Identities = 75/97 (77%), Positives = 86/97 (88%), Gaps = 7/97 (7%)
 Frame = -3

Query: 274 MMSSVTLKPS------SAVRGLPSLARTT-TFRVQASGVKKIKTDTPYGTGGGMDLRNGV 116
           +M+SV+LKP+      S+VRGLPSL+R++ +FRV ASG KKIKTDTPYGTGGGM+LRNGV
Sbjct: 5   VMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGV 64

Query: 115 DASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSP 5
           DASGRKP GKGVYQ+VDKYGANVDGYSPIYD KDWSP
Sbjct: 65  DASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSP 101


>gb|ABI14811.1| chloroplast photosystem II light-inducible protein [Pachysandra
           terminalis]
          Length = 138

 Score =  149 bits (377), Expect = 2e-34
 Identities = 75/100 (75%), Positives = 87/100 (87%), Gaps = 6/100 (6%)
 Frame = -3

Query: 283 STVMMSSVTLKPS-----SAVRGLPSLAR-TTTFRVQASGVKKIKTDTPYGTGGGMDLRN 122
           +T +MSS++LK S     SA RGLPSLAR +++FRV+ASGVKKIKTD PYGTGGGM LR+
Sbjct: 2   ATSVMSSLSLKASPFLEKSAARGLPSLARPSSSFRVEASGVKKIKTDKPYGTGGGMSLRD 61

Query: 121 GVDASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPA 2
           G+DASGRKP GKGVYQFVDKYGANVDGYSPIYD+ DWSP+
Sbjct: 62  GLDASGRKPKGKGVYQFVDKYGANVDGYSPIYDQXDWSPS 101


>ref|XP_002529952.1| Photosystem II 10 kDa polypeptide, chloroplast precursor, putative
           [Ricinus communis] gi|223530550|gb|EEF32429.1|
           Photosystem II 10 kDa polypeptide, chloroplast
           precursor, putative [Ricinus communis]
          Length = 138

 Score =  144 bits (364), Expect = 6e-33
 Identities = 72/97 (74%), Positives = 83/97 (85%), Gaps = 7/97 (7%)
 Frame = -3

Query: 274 MMSSVTLKPS-------SAVRGLPSLARTTTFRVQASGVKKIKTDTPYGTGGGMDLRNGV 116
           +M+SV+LKPS       S+VRGLP+L+R T FR++ASG KKIKTD PYG GGGM+LRNGV
Sbjct: 5   VMASVSLKPSPFTVQKSSSVRGLPTLSRRT-FRIEASGGKKIKTDKPYGIGGGMELRNGV 63

Query: 115 DASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSP 5
           DASGRKPTGKGVYQFVDKYGANVDGYSPIY+  +WSP
Sbjct: 64  DASGRKPTGKGVYQFVDKYGANVDGYSPIYNTDEWSP 100


>gb|AAQ24852.1| 10 kDa photosystem II polypeptide [Trifolium pratense]
          Length = 136

 Score =  144 bits (363), Expect = 7e-33
 Identities = 73/96 (76%), Positives = 82/96 (85%), Gaps = 6/96 (6%)
 Frame = -3

Query: 274 MMSSVTLKPS------SAVRGLPSLARTTTFRVQASGVKKIKTDTPYGTGGGMDLRNGVD 113
           +M+SV+LKP+      S+VRGLP+L+R   FRV ASGVKKIKTDTPYGTGGGMDL NG+D
Sbjct: 5   VMASVSLKPTPFMVEKSSVRGLPNLSRP--FRVVASGVKKIKTDTPYGTGGGMDLPNGLD 62

Query: 112 ASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSP 5
           ASGRK  GKGVYQFVDKYGANVDGYSPIY+ KDWSP
Sbjct: 63  ASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSP 98


>gb|ABQ41961.1| photosystem II 10 kDa polypeptide [Sonneratia alba]
          Length = 121

 Score =  144 bits (362), Expect = 1e-32
 Identities = 71/93 (76%), Positives = 77/93 (82%), Gaps = 6/93 (6%)
 Frame = -3

Query: 262 VTLKPS------SAVRGLPSLARTTTFRVQASGVKKIKTDTPYGTGGGMDLRNGVDASGR 101
           V+LKP+      SA RGLPSLART+T +VQASG KKIKTD PYG  GGMDLR+G DASGR
Sbjct: 1   VSLKPAPFTAERSAARGLPSLARTSTLKVQASGGKKIKTDKPYGINGGMDLRDGKDASGR 60

Query: 100 KPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPA 2
           KP GKGVYQFVDKYGANVDGYSPIYD  DWSP+
Sbjct: 61  KPRGKGVYQFVDKYGANVDGYSPIYDTNDWSPS 93