BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043247
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containi...   108   6e-22
ref|XP_002520160.1| pentatricopeptide repeat-containing protein,...    79   4e-13
ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containi...    79   5e-13
ref|XP_002512787.1| pentatricopeptide repeat-containing protein,...    78   7e-13
ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containi...    78   9e-13

>ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  108 bits (269), Expect = 6e-22
 Identities = 51/100 (51%), Positives = 72/100 (72%), Gaps = 4/100 (4%)
 Frame = +1

Query: 1   FTNPFISSKLLMWC----DDISFASLLFKQIENPNIYAWNYMSRIYAHSEMPEKSVFVYN 168
           F +P +SSKLL +      D +F+  LF QI  PN+++WN+M R Y+ S  P +++ +YN
Sbjct: 57  FRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYN 116

Query: 169 MMRRNGVVVPDNYTFPFVLKACSRLLVLDKGREVHLSSLK 288
           +M RNG  +PDNY+FPFVLKAC+RL +L KGRE+H S+LK
Sbjct: 117 LMLRNG-TLPDNYSFPFVLKACARLSLLHKGREIHSSTLK 155


>ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540652|gb|EEF42215.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 330

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
 Frame = +1

Query: 13  FISSKLLMWC--DDISFASLLFKQIENPNIYAWNYMSRIYAHS-EMPEKSVFVYNMMRRN 183
           F+ SK+L +   +D+ +A  LF + +NPN + WN + R  A S +  E+S  +Y  M   
Sbjct: 65  FLYSKILHFSSFNDLDYAYRLFSKFDNPNAFMWNTLIRACARSYDRKEQSFLLYKRMIEQ 124

Query: 184 GVVVPDNYTFPFVLKACSRLLVLDKGREVHLSSLK 288
           G V+PD +T+PFVLKAC+ L  L++G++VH   LK
Sbjct: 125 GAVLPDKHTYPFVLKACAYLFALNEGKQVHAQMLK 159


>ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 34/82 (41%), Positives = 53/82 (64%)
 Frame = +1

Query: 43  DDISFASLLFKQIENPNIYAWNYMSRIYAHSEMPEKSVFVYNMMRRNGVVVPDNYTFPFV 222
           D +  + LLF QI+ PN++ WN M R Y+ S+ P +++ +Y  M   G+  P+N+TFPF+
Sbjct: 58  DGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFL 117

Query: 223 LKACSRLLVLDKGREVHLSSLK 288
           L +C+RL  L+ G EVH   +K
Sbjct: 118 LNSCARLSSLEPGHEVHSHIIK 139


>ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547798|gb|EEF49290.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 480

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
 Frame = +1

Query: 25  KLLMWC---DDISFASLLFKQIENPNIYAWNYMSRIYAHSEMPEKSVFVYNMMRRNGVVV 195
           KLL  C     + +A+L+F QI+NP+ + WN+M R Y ++   ++++ +YN+M   G   
Sbjct: 69  KLLRLCFSYQKVDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEG-FS 127

Query: 196 PDNYTFPFVLKACSRLLVLDKGREVHLSSLK 288
           PD +TFPFV+KAC     LDKG+EVH  ++K
Sbjct: 128 PDKFTFPFVIKACLDHSALDKGKEVHGFAIK 158


>ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 34/90 (37%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
 Frame = +1

Query: 13  FISSKLLMWCDDIS---FASLLFKQIENPNIYAWNYMSRIYAHSEMPEKSVFVYNMMRRN 183
           F+ +K+L  CD++S   +A+++F+Q+ENPN++++N + R Y H+     ++ V+N M   
Sbjct: 40  FLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTT 99

Query: 184 GVVVPDNYTFPFVLKACSRLLVLDKGREVH 273
               PD +TFPFV+K+C+ LL    G++VH
Sbjct: 100 KSASPDKFTFPFVIKSCAGLLCRRLGQQVH 129