BLASTX nr result
ID: Coptis25_contig00043234
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00043234
(516 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi... 222 2e-56
ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|2... 206 2e-51
ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containi... 200 9e-50
ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containi... 200 9e-50
ref|XP_002512699.1| pentatricopeptide repeat-containing protein,... 186 2e-45
>ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 662
Score = 222 bits (566), Expect = 2e-56
Identities = 111/171 (64%), Positives = 132/171 (77%)
Frame = +3
Query: 3 RLIFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGL 182
+L+F S RNSVSWTL+ RLY ED+P A+ FK+MVE E+D +AL T + AC L
Sbjct: 148 KLVFCKSARRNSVSWTLISRLYIMEDKPGLAVDMFKQMVESKSEIDPLALVTAIVACGML 207
Query: 183 KSLREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIF 362
KSL+EGR VH+IAK GL+ DVLV+NSLLKMYIDCGSIKDAR VF++M SKDVISWT IF
Sbjct: 208 KSLQEGRYVHEIAKKCGLEADVLVSNSLLKMYIDCGSIKDARAVFDRMPSKDVISWTEIF 267
Query: 363 HWYVKNGEFNEALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIH 515
YVKNG FNE LKLFR M+ +G KPDS+++S +LPAC R AA K GKEIH
Sbjct: 268 RGYVKNGGFNEGLKLFRQMSMEGVKPDSLAISSILPACGRGAAHKQGKEIH 318
Score = 87.8 bits (216), Expect = 8e-16
Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 1/169 (0%)
Frame = +3
Query: 3 RLIFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGL 182
R +F+ ++ +SWT + R Y ++ F++M G++ D++A++++L AC
Sbjct: 249 RAVFDRMPSKDVISWTEIFRGYVKNGGFNEGLKLFRQMSMEGVKPDSLAISSILPACGRG 308
Query: 183 KSLREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIF 362
+ ++G+++H G+DL+V V N++L MY+ G I+ A +F M +D ISWT +
Sbjct: 309 AAHKQGKEIHAYLLRNGIDLNVTVQNAVLDMYVKSGFIESAAKIFAGMKDRDAISWTVMI 368
Query: 363 HWYVKNGEFNEALKLFRLM-NSQGTKPDSVSVSGVLPACARIAAGKNGK 506
Y +G+ + LFR M + + D ++ + L AC + G+
Sbjct: 369 LGYSLHGQGELGVDLFRKMEKNSSVEIDQIAYAAALHACTTARLVEQGR 417
Score = 71.6 bits (174), Expect = 6e-11
Identities = 41/169 (24%), Positives = 82/169 (48%)
Frame = +3
Query: 9 IFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGLKS 188
+F+ N+ +W LI+ + + T+++M+ G+ D + +L A S
Sbjct: 49 LFDEIPVSNTFAWNNLIQTHLTNGDSDRVVSTYRQMLLRGVRPDKHTIPRILTAARHTSS 108
Query: 189 LREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHW 368
G++VH A GL + V ++LL+MY A+LVF K + ++ +SWT I
Sbjct: 109 FSFGKQVHGHALKLGLSSESYVISALLEMYGRLDGANAAKLVFCKSARRNSVSWTLISRL 168
Query: 369 YVKNGEFNEALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIH 515
Y+ + A+ +F+ M ++ D +++ + AC + + + G+ +H
Sbjct: 169 YIMEDKPGLAVDMFKQMVESKSEIDPLALVTAIVACGMLKSLQEGRYVH 217
>ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|222841170|gb|EEE78717.1|
predicted protein [Populus trichocarpa]
Length = 663
Score = 206 bits (524), Expect = 2e-51
Identities = 101/169 (59%), Positives = 127/169 (75%)
Frame = +3
Query: 9 IFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGLKS 188
+F+ S RNSV+WT++++LY E++P AI F +MVE+ +D+V L T GAC LKS
Sbjct: 151 LFDKSPRRNSVAWTMILKLYLMENKPDLAINVFYQMVELNARIDSVVLITAAGACGLLKS 210
Query: 189 LREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHW 368
+ GR+VHD+A+ F L+ D+LV+NSLLKM IDC ++DAR FN+M++KDVISWT I
Sbjct: 211 VEHGRRVHDVARKFRLESDILVSNSLLKMQIDCQRMEDARGFFNQMTTKDVISWTEIICG 270
Query: 369 YVKNGEFNEALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIH 515
YVK GEFNEALKLFR MN G KPDS+SVS VLPACAR A KNGKEIH
Sbjct: 271 YVKKGEFNEALKLFRKMNMDGIKPDSLSVSSVLPACARTVAHKNGKEIH 319
Score = 82.8 bits (203), Expect = 3e-14
Identities = 48/169 (28%), Positives = 90/169 (53%), Gaps = 1/169 (0%)
Frame = +3
Query: 3 RLIFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGL 182
R FN ++ +SWT +I Y + A++ F++M GI+ D++++++VL AC+
Sbjct: 250 RGFFNQMTTKDVISWTEIICGYVKKGEFNEALKLFRKMNMDGIKPDSLSVSSVLPACART 309
Query: 183 KSLREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIF 362
+ + G+++H + G+D +++V N+ MY G + A VF +M +DVISWT +
Sbjct: 310 VAHKNGKEIHGYSLRNGMDNNLIVQNATTDMYAKSGLVDYALKVFERMKKRDVISWTVMI 369
Query: 363 HWYVKNGEFNEALKLF-RLMNSQGTKPDSVSVSGVLPACARIAAGKNGK 506
+ +G+ ++LF R+ Q + D + + VL C + GK
Sbjct: 370 LGFSLHGKGELGVELFCRMEKDQRVEADQFTYAAVLHCCTAACMVEEGK 418
>ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 429
Score = 200 bits (509), Expect = 9e-50
Identities = 97/170 (57%), Positives = 124/170 (72%), Gaps = 1/170 (0%)
Frame = +3
Query: 9 IFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGLKS 188
+ + S RNSVSWT+L +LY ED+P A+ F +MVE+ ++DAVALAT +GAC LK
Sbjct: 116 LHDKSTCRNSVSWTVLAKLYLREDKPSLALDLFYQMVELADDIDAVALATAIGACGALKM 175
Query: 189 LREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHW 368
L GR +H +A+ GL+ ++LV+NSLLKMYIDC SIKDAR F++M SKD+ISWT + H
Sbjct: 176 LHHGRNIHHLARVHGLEFNILVSNSLLKMYIDCDSIKDARGFFDQMPSKDIISWTELIHM 235
Query: 369 YVKNGEFNEALKLFRLMNSQG-TKPDSVSVSGVLPACARIAAGKNGKEIH 515
YVK G NEA KLFR MN G KPD ++S +LPAC R+AA K+GKEIH
Sbjct: 236 YVKKGGINEAFKLFRQMNMDGELKPDPRTISSILPACGRMAAHKHGKEIH 285
Score = 75.9 bits (185), Expect = 3e-12
Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Frame = +3
Query: 3 RLIFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMG-IEVDAVALATVLGACSG 179
R F+ ++ +SWT LI +Y + A + F++M G ++ D ++++L AC
Sbjct: 215 RGFFDQMPSKDIISWTELIHMYVKKGGINEAFKLFRQMNMDGELKPDPRTISSILPACGR 274
Query: 180 LKSLREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAI 359
+ + + G+++H D +++V N+L+ MY+ G I+ A F+ M KD++SW+ +
Sbjct: 275 MAAHKHGKEIHGYVVKNAFDENLIVQNALVDMYVKSGCIQSASKTFSMMKEKDMVSWSIM 334
Query: 360 FHWYVKNGEFNEALKLFRLMNSQ-GTKPDSVSVSGVLPAC 476
Y +G+ + LFR M + D ++ + VL AC
Sbjct: 335 TLGYSLHGQGKLGVSLFREMEKNFKMRRDEITYTAVLHAC 374
Score = 64.3 bits (155), Expect = 1e-08
Identities = 39/169 (23%), Positives = 83/169 (49%)
Frame = +3
Query: 9 IFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGLKS 188
+F++ ++ +W LI+ + I T+++M+ G+ D L ++ A
Sbjct: 15 VFDDIPIWDTFAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIICATRQYGD 74
Query: 189 LREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHW 368
L+ G+++H A G ++ V SL+++Y S A+ + +K + ++ +SWT +
Sbjct: 75 LQVGKQLHAQAFKLGFSSNLYVLTSLIELYGILDSADTAKWLHDKSTCRNSVSWTVLAKL 134
Query: 369 YVKNGEFNEALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIH 515
Y++ + + AL LF M D+V+++ + AC + +G+ IH
Sbjct: 135 YLREDKPSLALDLFYQMVELADDIDAVALATAIGACGALKMLHHGRNIH 183
>ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 629
Score = 200 bits (509), Expect = 9e-50
Identities = 97/170 (57%), Positives = 124/170 (72%), Gaps = 1/170 (0%)
Frame = +3
Query: 9 IFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGLKS 188
+ + S RNSVSWT+L +LY ED+P A+ F +MVE+ ++DAVALAT +GAC LK
Sbjct: 116 LHDKSTCRNSVSWTVLAKLYLREDKPSLALDLFYQMVELADDIDAVALATAIGACGALKM 175
Query: 189 LREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHW 368
L GR +H +A+ GL+ ++LV+NSLLKMYIDC SIKDAR F++M SKD+ISWT + H
Sbjct: 176 LHHGRNIHHLARVHGLEFNILVSNSLLKMYIDCDSIKDARGFFDQMPSKDIISWTELIHM 235
Query: 369 YVKNGEFNEALKLFRLMNSQG-TKPDSVSVSGVLPACARIAAGKNGKEIH 515
YVK G NEA KLFR MN G KPD ++S +LPAC R+AA K+GKEIH
Sbjct: 236 YVKKGGINEAFKLFRQMNMDGELKPDPRTISSILPACGRMAAHKHGKEIH 285
Score = 75.9 bits (185), Expect = 3e-12
Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Frame = +3
Query: 3 RLIFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMG-IEVDAVALATVLGACSG 179
R F+ ++ +SWT LI +Y + A + F++M G ++ D ++++L AC
Sbjct: 215 RGFFDQMPSKDIISWTELIHMYVKKGGINEAFKLFRQMNMDGELKPDPRTISSILPACGR 274
Query: 180 LKSLREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAI 359
+ + + G+++H D +++V N+L+ MY+ G I+ A F+ M KD++SW+ +
Sbjct: 275 MAAHKHGKEIHGYVVKNAFDENLIVQNALVDMYVKSGCIQSASKTFSMMKEKDMVSWSIM 334
Query: 360 FHWYVKNGEFNEALKLFRLMNSQ-GTKPDSVSVSGVLPAC 476
Y +G+ + LFR M + D ++ + VL AC
Sbjct: 335 TLGYSLHGQGKLGVSLFREMEKNFKMRRDEITYTAVLHAC 374
Score = 64.3 bits (155), Expect = 1e-08
Identities = 39/169 (23%), Positives = 83/169 (49%)
Frame = +3
Query: 9 IFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGLKS 188
+F++ ++ +W LI+ + I T+++M+ G+ D L ++ A
Sbjct: 15 VFDDIPIWDTFAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIICATRQYGD 74
Query: 189 LREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHW 368
L+ G+++H A G ++ V SL+++Y S A+ + +K + ++ +SWT +
Sbjct: 75 LQVGKQLHAQAFKLGFSSNLYVLTSLIELYGILDSADTAKWLHDKSTCRNSVSWTVLAKL 134
Query: 369 YVKNGEFNEALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIH 515
Y++ + + AL LF M D+V+++ + AC + +G+ IH
Sbjct: 135 YLREDKPSLALDLFYQMVELADDIDAVALATAIGACGALKMLHHGRNIH 183
>ref|XP_002512699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548660|gb|EEF50151.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 686
Score = 186 bits (472), Expect = 2e-45
Identities = 93/171 (54%), Positives = 123/171 (71%)
Frame = +3
Query: 3 RLIFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGL 182
R +F+NS +NSVSWT+L RLY +++P + F +M++ D VALAT L AC L
Sbjct: 152 RSLFDNSPSKNSVSWTVLARLYLMQNKPDVVLSLFYQMLDFNSLFDPVALATALRACGML 211
Query: 183 KSLREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIF 362
+S+ G+ +H AK L+ D+LV+NSLLKMY+DC I+DAR F++M +KD+ISWT I
Sbjct: 212 RSMHHGKILHGFAKKCRLEFDILVSNSLLKMYVDCHCIEDARATFHQMPTKDIISWTEII 271
Query: 363 HWYVKNGEFNEALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIH 515
+ YVK GEFNEALKLFR MN G +PDS+S+S +LPACAR AA K G+EIH
Sbjct: 272 NGYVKIGEFNEALKLFRQMNIAGIRPDSLSLSTILPACARPAAHKLGREIH 322
Score = 87.0 bits (214), Expect = 1e-15
Identities = 50/169 (29%), Positives = 91/169 (53%), Gaps = 1/169 (0%)
Frame = +3
Query: 3 RLIFNNSCYRNSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGL 182
R F+ ++ +SWT +I Y A++ F++M GI D+++L+T+L AC+
Sbjct: 253 RATFHQMPTKDIISWTEIINGYVKIGEFNEALKLFRQMNIAGIRPDSLSLSTILPACARP 312
Query: 183 KSLREGRKVHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIF 362
+ + GR++H G++L++++ N+L+ MY+ G ++ A L+F +M KDVISWT +
Sbjct: 313 AAHKLGREIHAYLLRNGIELNLMLQNALIDMYVKSGFMESASLIFVRMKEKDVISWTVMI 372
Query: 363 HWYVKNGEFNEALKLF-RLMNSQGTKPDSVSVSGVLPACARIAAGKNGK 506
+ +G+ ++LF RL + D + VL C + GK
Sbjct: 373 LGFSLHGQGELGVELFRRLEKDPSIEIDQYIYAAVLRCCTTACMVEEGK 421
Score = 65.1 bits (157), Expect = 6e-09
Identities = 44/161 (27%), Positives = 73/161 (45%)
Frame = +3
Query: 33 NSVSWTLLIRLYTAEDRPVFAIQTFKEMVEMGIEVDAVALATVLGACSGLKSLREGRKVH 212
++ +W LI + P A+ + M+ G D VL A +L G+++H
Sbjct: 61 DTFAWNNLIHSHLTNRDPFSALSIYLHMLLRGALPDRRTFPRVLNASRLSTNLFLGKQIH 120
Query: 213 DIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGEFN 392
A FG D V +SL+ Y S AR +F+ SK+ +SWT + Y+ + +
Sbjct: 121 AQALKFGFSSDPYVISSLIDFYGHLDSTDAARSLFDNSPSKNSVSWTVLARLYLMQNKPD 180
Query: 393 EALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIH 515
L LF M + D V+++ L AC + + +GK +H
Sbjct: 181 VVLSLFYQMLDFNSLFDPVALATALRACGMLRSMHHGKILH 221