BLASTX nr result
ID: Coptis25_contig00043228
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00043228
(364 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containi... 166 2e-39
emb|CBI30973.3| unnamed protein product [Vitis vinifera] 166 2e-39
ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|2... 159 3e-37
ref|XP_002521729.1| pentatricopeptide repeat-containing protein,... 150 8e-35
ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containi... 134 6e-30
>ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 166 bits (420), Expect = 2e-39
Identities = 80/120 (66%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Frame = +2
Query: 5 GGRMEDGFKLLDQMEESRR-CGGQIGPYNSIIYGLYKENQSDKALQFLKDMGSFFPKAVE 181
GGRMEDGFK+L+ MEESR GG+I PYNSIIYGLYK+NQ ++AL+FL M FP+AV+
Sbjct: 452 GGRMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVD 511
Query: 182 MSLRLLGFCEEGVVGEAKRIYDQMIEEGSLPSALVYETLINCMCQQGDVRESFELMNEMV 361
SLR+LGFC EG +G+AKR+YDQMI+EG +PS LVY LI+ CQ G+VRE+FEL+NEMV
Sbjct: 512 RSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMV 571
Score = 56.2 bits (134), Expect = 3e-06
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Frame = +2
Query: 8 GRMEDGFKLLDQMEESRRCGG--QIGPYNSIIYGLYKENQSDKALQFLKDM--GSFFPKA 175
G + D ++ DQM + GG + Y +I+G ++ +A + + +M +FP A
Sbjct: 523 GSIGDAKRVYDQMIKE---GGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTA 579
Query: 176 VEMSLRLLGFCEEGVVGEAKRIYDQMIEEGSLPSALVYETLINCMCQQGDVRESFELMNE 355
+ + FC +G VG A ++ + M+ G LP Y +++ +C +GD +++ L +
Sbjct: 580 PTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQ 639
Query: 356 MV 361
MV
Sbjct: 640 MV 641
>emb|CBI30973.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 166 bits (420), Expect = 2e-39
Identities = 80/120 (66%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Frame = +2
Query: 5 GGRMEDGFKLLDQMEESRR-CGGQIGPYNSIIYGLYKENQSDKALQFLKDMGSFFPKAVE 181
GGRMEDGFK+L+ MEESR GG+I PYNSIIYGLYK+NQ ++AL+FL M FP+AV+
Sbjct: 300 GGRMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVD 359
Query: 182 MSLRLLGFCEEGVVGEAKRIYDQMIEEGSLPSALVYETLINCMCQQGDVRESFELMNEMV 361
SLR+LGFC EG +G+AKR+YDQMI+EG +PS LVY LI+ CQ G+VRE+FEL+NEMV
Sbjct: 360 RSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMV 419
Score = 56.2 bits (134), Expect = 3e-06
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Frame = +2
Query: 8 GRMEDGFKLLDQMEESRRCGG--QIGPYNSIIYGLYKENQSDKALQFLKDM--GSFFPKA 175
G + D ++ DQM + GG + Y +I+G ++ +A + + +M +FP A
Sbjct: 371 GSIGDAKRVYDQMIKE---GGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTA 427
Query: 176 VEMSLRLLGFCEEGVVGEAKRIYDQMIEEGSLPSALVYETLINCMCQQGDVRESFELMNE 355
+ + FC +G VG A ++ + M+ G LP Y +++ +C +GD +++ L +
Sbjct: 428 PTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQ 487
Query: 356 MV 361
MV
Sbjct: 488 MV 489
>ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|222856668|gb|EEE94215.1|
predicted protein [Populus trichocarpa]
Length = 584
Score = 159 bits (401), Expect = 3e-37
Identities = 75/119 (63%), Positives = 96/119 (80%), Gaps = 1/119 (0%)
Frame = +2
Query: 8 GRMEDGFKLLDQMEESRR-CGGQIGPYNSIIYGLYKENQSDKALQFLKDMGSFFPKAVEM 184
GR EDGFK+L+ MEE+R CGG I PYNS++YGLY++N ++AL+FL M + FP+AV+
Sbjct: 374 GRTEDGFKILELMEETRGVCGGSISPYNSVLYGLYRKNMLNEALEFLMKMENLFPRAVDR 433
Query: 185 SLRLLGFCEEGVVGEAKRIYDQMIEEGSLPSALVYETLINCMCQQGDVRESFELMNEMV 361
SLR+LGFCEEG + EAKR+YDQM EG +PSALVY+ LI+ CQ+G VRE+ ELMNEMV
Sbjct: 434 SLRILGFCEEGAIQEAKRVYDQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMV 492
>ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539120|gb|EEF40716.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 629
Score = 150 bits (380), Expect = 8e-35
Identities = 70/120 (58%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Frame = +2
Query: 5 GGRMEDGFKLLDQMEESRR-CGGQIGPYNSIIYGLYKENQSDKALQFLKDMGSFFPKAVE 181
GGR+E+G K+L+ MEES+ GG+I PYNS++YGLYK+N D+AL+FL M FP+AV+
Sbjct: 397 GGRIEEGLKILELMEESKGGSGGRISPYNSVLYGLYKKNMWDEALEFLMKMEKLFPRAVD 456
Query: 182 MSLRLLGFCEEGVVGEAKRIYDQMIEEGSLPSALVYETLINCMCQQGDVRESFELMNEMV 361
SLR+LGFCE+G V AK ++DQMI EG P+ LVY+ L++ CQ+G++RE+FELMNEMV
Sbjct: 457 RSLRILGFCEKGAVKNAKMVFDQMINEGGTPNILVYDCLVHGFCQEGNLREAFELMNEMV 516
>ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Glycine max]
Length = 618
Score = 134 bits (338), Expect = 6e-30
Identities = 64/119 (53%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
Frame = +2
Query: 11 RMEDGFKLLDQMEESRRCG-GQIGPYNSIIYGLYKENQSDKALQFLKDMGSFFPKAVEMS 187
R+EDGF +L+ MEES+ G I PYNSIIYGL K+N D++ +FL MG+ FP+AV+ S
Sbjct: 396 RIEDGFSILELMEESKEGSRGHISPYNSIIYGLLKKNGFDESAEFLTKMGNLFPRAVDRS 455
Query: 188 LRLLGFCEEGVVGEAKRIYDQMIEEGSLPSALVYETLINCMCQQGDVRESFELMNEMVS 364
L +L C++G + +AKR+YDQMI+EG +PS LVY L++ +QG+VRE+ ELMNEM++
Sbjct: 456 LMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNVREAVELMNEMIA 514
Score = 61.2 bits (147), Expect = 8e-08
Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Frame = +2
Query: 8 GRMEDGFKLLDQMEESRRCGG--QIGPYNSIIYGLYKENQSDKALQFLKDM--GSFFPKA 175
G +ED ++ DQM + GG I YN +++G K+ +A++ + +M + FP
Sbjct: 465 GAIEDAKRVYDQMIDE---GGIPSILVYNCLVHGFSKQGNVREAVELMNEMIANNCFPIP 521
Query: 176 VEMSLRLLGFCEEGVVGEAKRIYDQMIEEGSLPSALVYETLINCMCQQGDVRESFELMNE 355
+ + GFC +G V A ++ + + G +P+ Y LI+ +C+ GD++++ ++ +
Sbjct: 522 STFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYSPLIDVLCRNGDLQKAMQVFMQ 581
Query: 356 MV 361
MV
Sbjct: 582 MV 583