BLASTX nr result
ID: Coptis25_contig00043189
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00043189 (350 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFK37781.1| unknown [Lotus japonicus] 58 7e-07 ref|XP_003612646.1| F-box family protein [Medicago truncatula] g... 57 1e-06 ref|XP_003612650.1| F-box family protein [Medicago truncatula] g... 55 5e-06 >gb|AFK37781.1| unknown [Lotus japonicus] Length = 489 Score = 58.2 bits (139), Expect = 7e-07 Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 15/118 (12%) Frame = +2 Query: 2 PITGDYVALPSDTCIFKDVGF------IAFGYDIVNNEYKVIRV------RHHNCGGEVC 145 PITG+++ LP + I K F FG+ NNEYKV+R+ H EV Sbjct: 200 PITGEFIRLPQTSRIGKTNKFSIQEIYAGFGFQPKNNEYKVVRILRGLQFYHGIMAAEVH 259 Query: 146 TLGTTRWRRLEGVVPPFFK-QFGILVKGNLHWISDELD--KIVVFNVALEKFHEIQSP 310 TLGT+ WR +E F+ +F V G LHWI I+ F+ E+F +P Sbjct: 260 TLGTSTWRNVEVNSMYFYHLRFPTCVSGALHWIGSYHGTLSILCFDFESERFRSFPTP 317 >ref|XP_003612646.1| F-box family protein [Medicago truncatula] gi|355513981|gb|AES95604.1| F-box family protein [Medicago truncatula] Length = 441 Score = 57.4 bits (137), Expect = 1e-06 Identities = 51/135 (37%), Positives = 68/135 (50%), Gaps = 19/135 (14%) Frame = +2 Query: 2 PITGDYVALPSDTCIFKDVGFI--AFGYDIVNNEYKVIRVRHHNCGG----------EVC 145 PI G+++ LP I I A G+ NEYKVIR+ C G E+ Sbjct: 165 PIIGEFIRLPEAIGIANTRKPICAALGFQPKTNEYKVIRM-WKRCDGWCYKSDVMVVEMH 223 Query: 146 TLGTTRWRRLEGVVPPF-FKQFG--ILVKGNLHWIS-DELDK---IVVFNVALEKFHEIQ 304 TLGTT WR +E V P F F + G V G LHWI+ D+ +K I+ FN EKF Sbjct: 224 TLGTTTWRNVE-VDPMFSFTRLGSPTCVNGALHWINYDDKNKTRSILCFNFESEKFQSFP 282 Query: 305 SPFHMPEPNIQKISL 349 SP P P+ +++S+ Sbjct: 283 SP---PHPHHKRLSI 294 >ref|XP_003612650.1| F-box family protein [Medicago truncatula] gi|355513985|gb|AES95608.1| F-box family protein [Medicago truncatula] Length = 441 Score = 55.5 bits (132), Expect = 5e-06 Identities = 50/135 (37%), Positives = 67/135 (49%), Gaps = 19/135 (14%) Frame = +2 Query: 2 PITGDYVALPSDTCIFKDVGFI--AFGYDIVNNEYKVIRVRHHNCGG----------EVC 145 PI G+++ LP I I A G+ NEYKVIR+ C G E+ Sbjct: 165 PIIGEFIRLPEAIGIANTRKPICAALGFQPKTNEYKVIRM-WKRCDGWCYKSDVMVVEMH 223 Query: 146 TLGTTRWRRLEGVVPPF-FKQFG--ILVKGNLHWIS-DELDK---IVVFNVALEKFHEIQ 304 TLGT WR +E V P F F + G V G LHWI+ D+ +K I+ FN EKF Sbjct: 224 TLGTATWRNVE-VDPMFSFTRLGSPTCVNGALHWINYDDKNKTRSILCFNFESEKFQSFP 282 Query: 305 SPFHMPEPNIQKISL 349 SP P P+ +++S+ Sbjct: 283 SP---PHPHHKRLSI 294