BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043175
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|2...   171   7e-41
ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containi...   170   1e-40
ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containi...   156   2e-36
ref|XP_003588753.1| Pentatricopeptide repeat-containing protein ...   155   4e-36
ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group] g...   154   9e-36

>ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|222854636|gb|EEE92183.1|
           predicted protein [Populus trichocarpa]
          Length = 487

 Score =  171 bits (432), Expect = 7e-41
 Identities = 79/117 (67%), Positives = 98/117 (83%)
 Frame = +1

Query: 1   AGLVQEGCNYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVTKALELVNKMPFEPNPVIYR 180
           +GLV +G  YF SM  DF+IVPKIEHYGCMVD+  RAGLV +AL+ V +MP +PNPV++R
Sbjct: 229 SGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWR 288

Query: 181 TLINACRAHGQLELSENITKQLIGDEPLHGSNYVLLSNIYAKMSRWDKKSNIRKFME 351
           TLINACRAHG+L+L E IT+QLI +EP+H SNYVLLSNIYAKMS W+KK+ IR+ M+
Sbjct: 289 TLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMD 345


>ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
           gi|296082021|emb|CBI21026.3| unnamed protein product
           [Vitis vinifera]
          Length = 583

 Score =  170 bits (431), Expect = 1e-40
 Identities = 81/116 (69%), Positives = 95/116 (81%)
 Frame = +1

Query: 1   AGLVQEGCNYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVTKALELVNKMPFEPNPVIYR 180
           +GLV+ G  YFS MT  F IVPKIEHYGCMVDL SRAGLVT+ALE V +MP EPNP+I+R
Sbjct: 325 SGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWR 384

Query: 181 TLINACRAHGQLELSENITKQLIGDEPLHGSNYVLLSNIYAKMSRWDKKSNIRKFM 348
           TLI+ACR HG+L+L E+I+KQLI +EP+H SNYVLLSNIY KM  W+KKS IR  M
Sbjct: 385 TLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAM 440


>ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
           gi|449529652|ref|XP_004171812.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  156 bits (394), Expect = 2e-36
 Identities = 73/117 (62%), Positives = 88/117 (75%)
 Frame = +1

Query: 1   AGLVQEGCNYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVTKALELVNKMPFEPNPVIYR 180
           +GLV+ G  YF SM   + +VPKIEHYGCMVD++ R GLV +ALE V  MP EPNPVI R
Sbjct: 348 SGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILR 407

Query: 181 TLINACRAHGQLELSENITKQLIGDEPLHGSNYVLLSNIYAKMSRWDKKSNIRKFME 351
           TL++ACR HG+ +L E ITK L+  EPLH SNYVLLSNIYAK   W+KK+ IR+ ME
Sbjct: 408 TLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVME 464


>ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355477801|gb|AES59004.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  155 bits (391), Expect = 4e-36
 Identities = 70/117 (59%), Positives = 92/117 (78%)
 Frame = +1

Query: 1   AGLVQEGCNYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVTKALELVNKMPFEPNPVIYR 180
           +GLV +G  YF SM  +F+IVPK+EHYGCMVDL  R G V +A E V KMPFEPN +I+R
Sbjct: 342 SGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWR 401

Query: 181 TLINACRAHGQLELSENITKQLIGDEPLHGSNYVLLSNIYAKMSRWDKKSNIRKFME 351
           T+I AC A G+L+L E+I+K+LI  EP+H SNYVLLSNIYAK+ +W+KK+ +R+ M+
Sbjct: 402 TIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMD 458


>ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
           gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza
           sativa Japonica Group] gi|108711802|gb|ABF99597.1|
           expressed protein [Oryza sativa Japonica Group]
           gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa
           Japonica Group] gi|125588431|gb|EAZ29095.1| hypothetical
           protein OsJ_13153 [Oryza sativa Japonica Group]
           gi|215736898|dbj|BAG95827.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 602

 Score =  154 bits (388), Expect = 9e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%)
 Frame = +1

Query: 1   AGLVQEGCNYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVTKALELVNKMPFEPNPVIYR 180
           AG+V EGC YF +M  ++ I PKIEHYGCMVD+F RAG+V +A+E V  MP +PNPVI+R
Sbjct: 344 AGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWR 403

Query: 181 TLINACRAHGQLELSENITKQLIGDEPLHGSNYVLLSNIYAKMSRWDKKSNIRKFM 348
           +L++ACRAHG+LEL E+IT+ L+ + P H +NY++LSN++A   RW +KS IR+ M
Sbjct: 404 SLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREM 459