BLASTX nr result
ID: Coptis25_contig00043175
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00043175 (352 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|2... 171 7e-41 ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containi... 170 1e-40 ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containi... 156 2e-36 ref|XP_003588753.1| Pentatricopeptide repeat-containing protein ... 155 4e-36 ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group] g... 154 9e-36 >ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa] Length = 487 Score = 171 bits (432), Expect = 7e-41 Identities = 79/117 (67%), Positives = 98/117 (83%) Frame = +1 Query: 1 AGLVQEGCNYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVTKALELVNKMPFEPNPVIYR 180 +GLV +G YF SM DF+IVPKIEHYGCMVD+ RAGLV +AL+ V +MP +PNPV++R Sbjct: 229 SGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWR 288 Query: 181 TLINACRAHGQLELSENITKQLIGDEPLHGSNYVLLSNIYAKMSRWDKKSNIRKFME 351 TLINACRAHG+L+L E IT+QLI +EP+H SNYVLLSNIYAKMS W+KK+ IR+ M+ Sbjct: 289 TLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMD 345 >ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Vitis vinifera] gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera] Length = 583 Score = 170 bits (431), Expect = 1e-40 Identities = 81/116 (69%), Positives = 95/116 (81%) Frame = +1 Query: 1 AGLVQEGCNYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVTKALELVNKMPFEPNPVIYR 180 +GLV+ G YFS MT F IVPKIEHYGCMVDL SRAGLVT+ALE V +MP EPNP+I+R Sbjct: 325 SGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWR 384 Query: 181 TLINACRAHGQLELSENITKQLIGDEPLHGSNYVLLSNIYAKMSRWDKKSNIRKFM 348 TLI+ACR HG+L+L E+I+KQLI +EP+H SNYVLLSNIY KM W+KKS IR M Sbjct: 385 TLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAM 440 >ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis sativus] gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis sativus] Length = 606 Score = 156 bits (394), Expect = 2e-36 Identities = 73/117 (62%), Positives = 88/117 (75%) Frame = +1 Query: 1 AGLVQEGCNYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVTKALELVNKMPFEPNPVIYR 180 +GLV+ G YF SM + +VPKIEHYGCMVD++ R GLV +ALE V MP EPNPVI R Sbjct: 348 SGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILR 407 Query: 181 TLINACRAHGQLELSENITKQLIGDEPLHGSNYVLLSNIYAKMSRWDKKSNIRKFME 351 TL++ACR HG+ +L E ITK L+ EPLH SNYVLLSNIYAK W+KK+ IR+ ME Sbjct: 408 TLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVME 464 >ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 600 Score = 155 bits (391), Expect = 4e-36 Identities = 70/117 (59%), Positives = 92/117 (78%) Frame = +1 Query: 1 AGLVQEGCNYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVTKALELVNKMPFEPNPVIYR 180 +GLV +G YF SM +F+IVPK+EHYGCMVDL R G V +A E V KMPFEPN +I+R Sbjct: 342 SGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWR 401 Query: 181 TLINACRAHGQLELSENITKQLIGDEPLHGSNYVLLSNIYAKMSRWDKKSNIRKFME 351 T+I AC A G+L+L E+I+K+LI EP+H SNYVLLSNIYAK+ +W+KK+ +R+ M+ Sbjct: 402 TIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMD 458 >ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group] gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group] gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group] gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group] gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group] gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group] Length = 602 Score = 154 bits (388), Expect = 9e-36 Identities = 66/116 (56%), Positives = 91/116 (78%) Frame = +1 Query: 1 AGLVQEGCNYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVTKALELVNKMPFEPNPVIYR 180 AG+V EGC YF +M ++ I PKIEHYGCMVD+F RAG+V +A+E V MP +PNPVI+R Sbjct: 344 AGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWR 403 Query: 181 TLINACRAHGQLELSENITKQLIGDEPLHGSNYVLLSNIYAKMSRWDKKSNIRKFM 348 +L++ACRAHG+LEL E+IT+ L+ + P H +NY++LSN++A RW +KS IR+ M Sbjct: 404 SLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREM 459