BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043173
         (200 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    73   2e-11
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    72   6e-11
ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containi...    70   1e-10
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    67   2e-09
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    61   8e-08

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 34/63 (53%), Positives = 47/63 (74%)
 Frame = -2

Query: 190 YQKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHETVLYVLMKLDQEPLKALDF 11
           Y K +FSS P+S+VEL    +WS+EL+ ELEK+  S L+HETV+YVL KLD++P +  +F
Sbjct: 56  YGKLFFSSKPNSIVELVLENDWSDELESELEKSS-SVLTHETVIYVLKKLDKDPQRTWNF 114

Query: 10  FTW 2
           F W
Sbjct: 115 FNW 117


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/65 (53%), Positives = 46/65 (70%)
 Frame = -2

Query: 196 NTYQKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHETVLYVLMKLDQEPLKAL 17
           N ++K Y SS PSS+VEL    +WS EL+ +LE +    L+HETV+YVL KLD++P KA 
Sbjct: 52  NIHKKLYSSSKPSSLVELLSVNDWSPELETQLENSS-PLLTHETVIYVLKKLDKDPHKAW 110

Query: 16  DFFTW 2
           DFF W
Sbjct: 111 DFFNW 115


>ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 34/65 (52%), Positives = 47/65 (72%)
 Frame = -2

Query: 196 NTYQKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHETVLYVLMKLDQEPLKAL 17
           N +Q  YFSS P+S+VEL  T +WS+ L+QELEK + S ++HETV+YVL +++  P KA 
Sbjct: 57  NIHQNLYFSSKPNSIVELVLTSDWSKGLEQELEKCYPS-MTHETVVYVLKRMEANPEKAW 115

Query: 16  DFFTW 2
            FF W
Sbjct: 116 CFFNW 120


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 31/59 (52%), Positives = 44/59 (74%)
 Frame = -2

Query: 178 YFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHETVLYVLMKLDQEPLKALDFFTW 2
           +FSS P S+++L  T +WSE L+ ELE  +  TL+HETV+YVL +LD++P KA +FF W
Sbjct: 53  FFSSNPQSLLQLVSTNDWSEMLETELETLN-PTLTHETVVYVLKRLDKQPQKASEFFNW 110


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
 Frame = -2

Query: 193 TYQKSYFSSTP--SSVVELFRTREWSEELKQELEKAHLSTLSHETVLYVLMKLDQEPLKA 20
           T+ K YFS+ P  +S+VEL  T +WS+ L+ +LE     ++ HETVLYV+ +LD+ P KA
Sbjct: 52  THHKLYFSTKPKPNSIVELLLTNDWSQALELKLEN-RFPSMPHETVLYVIKRLDKNPEKA 110

Query: 19  LDFFTW 2
             FF W
Sbjct: 111 SCFFNW 116