BLASTX nr result
ID: Coptis25_contig00043116
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00043116 (381 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containi... 108 6e-22 ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. l... 102 4e-20 emb|CBI19104.3| unnamed protein product [Vitis vinifera] 102 4e-20 ref|NP_193587.4| pentatricopeptide repeat-containing protein [Ar... 102 4e-20 ref|XP_002307403.1| predicted protein [Populus trichocarpa] gi|2... 100 2e-19 >ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Vitis vinifera] Length = 595 Score = 108 bits (269), Expect = 6e-22 Identities = 50/59 (84%), Positives = 54/59 (91%) Frame = +1 Query: 1 FDSMPERNEVSWKAMILGYARNGFCREALQLMYRMQAEGIKVDDYTQTTVLSACGDVEW 177 FDSMP+RN VSWKAMI+GYARNG C EAL+LMYRMQAEGI+VDDY TTVLSACGDVEW Sbjct: 524 FDSMPQRNLVSWKAMIVGYARNGLCGEALKLMYRMQAEGIEVDDYILTTVLSACGDVEW 582 >ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata] Length = 616 Score = 102 bits (253), Expect = 4e-20 Identities = 45/58 (77%), Positives = 52/58 (89%) Frame = +1 Query: 1 FDSMPERNEVSWKAMILGYARNGFCREALQLMYRMQAEGIKVDDYTQTTVLSACGDVE 174 FDSMPE+N VSWKAMI+GYARNGFCREAL+LMYRM+AEG +VDDY T+LS CGD+E Sbjct: 544 FDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTCGDIE 601 >emb|CBI19104.3| unnamed protein product [Vitis vinifera] Length = 457 Score = 102 bits (253), Expect = 4e-20 Identities = 47/56 (83%), Positives = 51/56 (91%) Frame = +1 Query: 10 MPERNEVSWKAMILGYARNGFCREALQLMYRMQAEGIKVDDYTQTTVLSACGDVEW 177 MP+RN VSWKAMI+GYARNG C EAL+LMYRMQAEGI+VDDY TTVLSACGDVEW Sbjct: 389 MPQRNLVSWKAMIVGYARNGLCGEALKLMYRMQAEGIEVDDYILTTVLSACGDVEW 444 >ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520 gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana] gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 617 Score = 102 bits (253), Expect = 4e-20 Identities = 45/58 (77%), Positives = 52/58 (89%) Frame = +1 Query: 1 FDSMPERNEVSWKAMILGYARNGFCREALQLMYRMQAEGIKVDDYTQTTVLSACGDVE 174 FDSMPE+N VSWKAMI+GYARNGFCREAL+LMYRM+AEG +VDDY T+LS CGD+E Sbjct: 544 FDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTCGDIE 601 >ref|XP_002307403.1| predicted protein [Populus trichocarpa] gi|222856852|gb|EEE94399.1| predicted protein [Populus trichocarpa] Length = 472 Score = 100 bits (248), Expect = 2e-19 Identities = 43/59 (72%), Positives = 51/59 (86%) Frame = +1 Query: 1 FDSMPERNEVSWKAMILGYARNGFCREALQLMYRMQAEGIKVDDYTQTTVLSACGDVEW 177 FDSMPERN V+W+AMI+GY RNG C+EAL+LMYRMQAEGI+VDDY VL ACG++EW Sbjct: 401 FDSMPERNLVTWRAMIMGYVRNGLCQEALKLMYRMQAEGIQVDDYISAKVLGACGEIEW 459