BLASTX nr result
ID: Coptis25_contig00043092
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00043092
(292 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002518663.1| U520, putative [Ricinus communis] gi|2235420... 76 6e-20
ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotei... 73 2e-19
ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuc... 74 2e-19
ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotei... 74 2e-19
emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera] 73 2e-19
>ref|XP_002518663.1| U520, putative [Ricinus communis] gi|223542044|gb|EEF43588.1| U520,
putative [Ricinus communis]
Length = 1809
Score = 75.9 bits (185), Expect(3) = 6e-20
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = +3
Query: 135 FVLSFRIIFEDNDREYILHHEYFMLKK*CIEEDHTSNFREPICEPLPPQSF 287
+V F +I EDND EYILHHEYFMLKK I+EDHT NF PI EPLPPQ F
Sbjct: 881 YVEPFWVIVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYF 931
Score = 35.8 bits (81), Expect(3) = 6e-20
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +2
Query: 68 LRVELTITTDFWWEESEDKVHGFCPVF 148
LRVELTIT DF W EDKVHG+ F
Sbjct: 862 LRVELTITPDFQW---EDKVHGYVEPF 885
Score = 30.4 bits (67), Expect(3) = 6e-20
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 4 QFIYQFPKLFLAAHVQQL 57
+FI+QFPKL LAAHVQ +
Sbjct: 840 KFIHQFPKLNLAAHVQPI 857
>ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis
vinifera]
Length = 2177
Score = 72.8 bits (177), Expect(3) = 2e-19
Identities = 35/51 (68%), Positives = 38/51 (74%)
Frame = +3
Query: 135 FVLSFRIIFEDNDREYILHHEYFMLKK*CIEEDHTSNFREPICEPLPPQSF 287
FV F +I EDND EYILHHEYFM+KK I+E HT NF PI EPLPPQ F
Sbjct: 1248 FVEPFWVIVEDNDGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYF 1298
Score = 37.0 bits (84), Expect(3) = 2e-19
Identities = 19/27 (70%), Positives = 19/27 (70%)
Frame = +2
Query: 68 LRVELTITTDFWWEESEDKVHGFCPVF 148
LRVELTIT DF W EDKVHGF F
Sbjct: 1229 LRVELTITPDFQW---EDKVHGFVEPF 1252
Score = 30.4 bits (67), Expect(3) = 2e-19
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 4 QFIYQFPKLFLAAHVQQL 57
+FI+QFPKL LAAHVQ +
Sbjct: 1207 KFIHQFPKLDLAAHVQPI 1224
>ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein
200 kDa helicase-like [Cucumis sativus]
Length = 2175
Score = 73.9 bits (180), Expect(3) = 2e-19
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +3
Query: 135 FVLSFRIIFEDNDREYILHHEYFMLKK*CIEEDHTSNFREPICEPLPPQSF 287
+V SF ++ EDND E+I HHE+F+LKK I+EDHT NF PICEPLPPQ F
Sbjct: 1246 YVESFWVLVEDNDGEFIHHHEHFLLKKQYIDEDHTLNFTVPICEPLPPQYF 1296
Score = 35.8 bits (81), Expect(3) = 2e-19
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +2
Query: 68 LRVELTITTDFWWEESEDKVHGFCPVF 148
LRVELTIT DF W EDKVHG+ F
Sbjct: 1227 LRVELTITPDFQW---EDKVHGYVESF 1250
Score = 30.4 bits (67), Expect(3) = 2e-19
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 4 QFIYQFPKLFLAAHVQQL 57
+FI+QFPKL LAAHVQ +
Sbjct: 1205 KFIHQFPKLNLAAHVQPI 1222
>ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Cucumis sativus]
Length = 2175
Score = 73.9 bits (180), Expect(3) = 2e-19
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +3
Query: 135 FVLSFRIIFEDNDREYILHHEYFMLKK*CIEEDHTSNFREPICEPLPPQSF 287
+V SF ++ EDND E+I HHE+F+LKK I+EDHT NF PICEPLPPQ F
Sbjct: 1246 YVESFWVLVEDNDGEFIHHHEHFLLKKQYIDEDHTLNFTVPICEPLPPQYF 1296
Score = 35.8 bits (81), Expect(3) = 2e-19
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +2
Query: 68 LRVELTITTDFWWEESEDKVHGFCPVF 148
LRVELTIT DF W EDKVHG+ F
Sbjct: 1227 LRVELTITPDFQW---EDKVHGYVESF 1250
Score = 30.4 bits (67), Expect(3) = 2e-19
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 4 QFIYQFPKLFLAAHVQQL 57
+FI+QFPKL LAAHVQ +
Sbjct: 1205 KFIHQFPKLNLAAHVQPI 1222
>emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera]
Length = 2144
Score = 72.8 bits (177), Expect(3) = 2e-19
Identities = 35/51 (68%), Positives = 38/51 (74%)
Frame = +3
Query: 135 FVLSFRIIFEDNDREYILHHEYFMLKK*CIEEDHTSNFREPICEPLPPQSF 287
FV F +I EDND EYILHHEYFM+KK I+E HT NF PI EPLPPQ F
Sbjct: 1215 FVEPFWVIVEDNDGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYF 1265
Score = 37.0 bits (84), Expect(3) = 2e-19
Identities = 19/27 (70%), Positives = 19/27 (70%)
Frame = +2
Query: 68 LRVELTITTDFWWEESEDKVHGFCPVF 148
LRVELTIT DF W EDKVHGF F
Sbjct: 1196 LRVELTITPDFQW---EDKVHGFVEPF 1219
Score = 30.4 bits (67), Expect(3) = 2e-19
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 4 QFIYQFPKLFLAAHVQQL 57
+FI+QFPKL LAAHVQ +
Sbjct: 1174 KFIHQFPKLDLAAHVQPI 1191