BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00043047
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containi...   156   1e-36
ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containi...   150   1e-34
ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containi...   149   3e-34
emb|CBI24229.3| unnamed protein product [Vitis vinifera]              142   4e-32
ref|XP_003588887.1| Pentatricopeptide repeat-containing protein ...   133   2e-29

>ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  156 bits (395), Expect = 1e-36
 Identities = 74/108 (68%), Positives = 91/108 (84%)
 Frame = -3

Query: 326 METQRLIYLLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLV 147
           M+T +L+ LLKTCI SK LKQGKL+HQKIV+L LQNNI+LCK LIN YF+CHLF+SA+LV
Sbjct: 1   MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLV 60

Query: 146 FQTIENPYDISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3
           FQTIENP DI+LWNGL++A TK+ ++ E L +F +L  FPYLKPD FT
Sbjct: 61  FQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFT 108



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 35/100 (35%), Positives = 52/100 (52%)
 Frame = -3

Query: 302 LLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLVFQTIENPY 123
           +L  C  S +L+ GK +H  I+   ++ +I +   LI+ YF C    SA  VFQ +    
Sbjct: 314 ILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTN 373

Query: 122 DISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3
            +S WN +IS Y K   Y EAL +F  ++    +KPD  T
Sbjct: 374 VVS-WNVMISGYVKVGSYLEALVIFTDMR-KAGVKPDAIT 411


>ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  150 bits (379), Expect = 1e-34
 Identities = 67/108 (62%), Positives = 90/108 (83%)
 Frame = -3

Query: 326 METQRLIYLLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLV 147
           M+T++L+ LL+ C+ SKSLKQGKL+HQK+VTL LQN+I LCK LIN Y +CHL++ A+ V
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCV 60

Query: 146 FQTIENPYDISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3
           F  +ENP +ISLWNGL++ YTK++MY EAL LF+KL  +PYLKPD++T
Sbjct: 61  FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYT 108


>ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  149 bits (375), Expect = 3e-34
 Identities = 67/108 (62%), Positives = 90/108 (83%)
 Frame = -3

Query: 326 METQRLIYLLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLV 147
           M+T++L+ LL+ C+ SKSLKQGKL+HQK+VTL LQN+I LCK LIN Y +CHL++ A+ V
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCV 60

Query: 146 FQTIENPYDISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3
           F  +ENP +ISLWNGL++ YTK++MY EAL LF+KL  +PYLKPD++T
Sbjct: 61  FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYT 108


>emb|CBI24229.3| unnamed protein product [Vitis vinifera]
          Length = 547

 Score =  142 bits (357), Expect = 4e-32
 Identities = 71/114 (62%), Positives = 92/114 (80%), Gaps = 6/114 (5%)
 Frame = -3

Query: 326 METQRLIYLLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLV 147
           M+T +L+ LLKTCI SK LKQGKL+HQKIV+L LQNNI+LCK LIN YF+CHLF+SA+LV
Sbjct: 1   MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLV 60

Query: 146 FQTIENPYDISLWNGLISAYTKHHMYNE------ALTLFDKLKIFPYLKPDNFT 3
           FQTIENP DI+LWNGL++A TK+ ++ E      AL LF+++K+  + KPD+ T
Sbjct: 61  FQTIENPLDITLWNGLMAACTKNFIFIEGLEPEKALELFEEMKVSGF-KPDSVT 113



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 35/100 (35%), Positives = 52/100 (52%)
 Frame = -3

Query: 302 LLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLVFQTIENPY 123
           +L  C  S +L+ GK +H  I+   ++ +I +   LI+ YF C    SA  VFQ +    
Sbjct: 218 ILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTN 277

Query: 122 DISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3
            +S WN +IS Y K   Y EAL +F  ++    +KPD  T
Sbjct: 278 VVS-WNVMISGYVKVGSYLEALVIFTDMR-KAGVKPDAIT 315


>ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355477935|gb|AES59138.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  133 bits (334), Expect = 2e-29
 Identities = 61/108 (56%), Positives = 87/108 (80%)
 Frame = -3

Query: 326 METQRLIYLLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLV 147
           M+ ++LI LL+  + SKSLKQGK++HQK+VTL LQN++ +CK LI+ Y +C+LF+ A+ V
Sbjct: 1   MDARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNV 60

Query: 146 FQTIENPYDISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3
           F  IENP++ISL NGL++ YT++ MY+EAL LFDKL  +P LKPD++T
Sbjct: 61  FDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYT 108