BLASTX nr result
ID: Coptis25_contig00043047
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00043047 (364 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containi... 156 1e-36 ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containi... 150 1e-34 ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containi... 149 3e-34 emb|CBI24229.3| unnamed protein product [Vitis vinifera] 142 4e-32 ref|XP_003588887.1| Pentatricopeptide repeat-containing protein ... 133 2e-29 >ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Vitis vinifera] Length = 694 Score = 156 bits (395), Expect = 1e-36 Identities = 74/108 (68%), Positives = 91/108 (84%) Frame = -3 Query: 326 METQRLIYLLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLV 147 M+T +L+ LLKTCI SK LKQGKL+HQKIV+L LQNNI+LCK LIN YF+CHLF+SA+LV Sbjct: 1 MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLV 60 Query: 146 FQTIENPYDISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3 FQTIENP DI+LWNGL++A TK+ ++ E L +F +L FPYLKPD FT Sbjct: 61 FQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFT 108 Score = 54.7 bits (130), Expect = 8e-06 Identities = 35/100 (35%), Positives = 52/100 (52%) Frame = -3 Query: 302 LLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLVFQTIENPY 123 +L C S +L+ GK +H I+ ++ +I + LI+ YF C SA VFQ + Sbjct: 314 ILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTN 373 Query: 122 DISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3 +S WN +IS Y K Y EAL +F ++ +KPD T Sbjct: 374 VVS-WNVMISGYVKVGSYLEALVIFTDMR-KAGVKPDAIT 411 >ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Glycine max] Length = 705 Score = 150 bits (379), Expect = 1e-34 Identities = 67/108 (62%), Positives = 90/108 (83%) Frame = -3 Query: 326 METQRLIYLLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLV 147 M+T++L+ LL+ C+ SKSLKQGKL+HQK+VTL LQN+I LCK LIN Y +CHL++ A+ V Sbjct: 1 MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCV 60 Query: 146 FQTIENPYDISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3 F +ENP +ISLWNGL++ YTK++MY EAL LF+KL +PYLKPD++T Sbjct: 61 FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYT 108 >ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Glycine max] Length = 705 Score = 149 bits (375), Expect = 3e-34 Identities = 67/108 (62%), Positives = 90/108 (83%) Frame = -3 Query: 326 METQRLIYLLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLV 147 M+T++L+ LL+ C+ SKSLKQGKL+HQK+VTL LQN+I LCK LIN Y +CHL++ A+ V Sbjct: 1 MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCV 60 Query: 146 FQTIENPYDISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3 F +ENP +ISLWNGL++ YTK++MY EAL LF+KL +PYLKPD++T Sbjct: 61 FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYT 108 >emb|CBI24229.3| unnamed protein product [Vitis vinifera] Length = 547 Score = 142 bits (357), Expect = 4e-32 Identities = 71/114 (62%), Positives = 92/114 (80%), Gaps = 6/114 (5%) Frame = -3 Query: 326 METQRLIYLLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLV 147 M+T +L+ LLKTCI SK LKQGKL+HQKIV+L LQNNI+LCK LIN YF+CHLF+SA+LV Sbjct: 1 MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLV 60 Query: 146 FQTIENPYDISLWNGLISAYTKHHMYNE------ALTLFDKLKIFPYLKPDNFT 3 FQTIENP DI+LWNGL++A TK+ ++ E AL LF+++K+ + KPD+ T Sbjct: 61 FQTIENPLDITLWNGLMAACTKNFIFIEGLEPEKALELFEEMKVSGF-KPDSVT 113 Score = 54.7 bits (130), Expect = 8e-06 Identities = 35/100 (35%), Positives = 52/100 (52%) Frame = -3 Query: 302 LLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLVFQTIENPY 123 +L C S +L+ GK +H I+ ++ +I + LI+ YF C SA VFQ + Sbjct: 218 ILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTN 277 Query: 122 DISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3 +S WN +IS Y K Y EAL +F ++ +KPD T Sbjct: 278 VVS-WNVMISGYVKVGSYLEALVIFTDMR-KAGVKPDAIT 315 >ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 697 Score = 133 bits (334), Expect = 2e-29 Identities = 61/108 (56%), Positives = 87/108 (80%) Frame = -3 Query: 326 METQRLIYLLKTCITSKSLKQGKLVHQKIVTLDLQNNISLCKQLINFYFTCHLFESARLV 147 M+ ++LI LL+ + SKSLKQGK++HQK+VTL LQN++ +CK LI+ Y +C+LF+ A+ V Sbjct: 1 MDARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNV 60 Query: 146 FQTIENPYDISLWNGLISAYTKHHMYNEALTLFDKLKIFPYLKPDNFT 3 F IENP++ISL NGL++ YT++ MY+EAL LFDKL +P LKPD++T Sbjct: 61 FDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYT 108