BLASTX nr result

ID: Coptis25_contig00042917 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042917
         (204 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004161121.1| PREDICTED: probable polygalacturonase-like [...   107   8e-22
ref|XP_004144044.1| PREDICTED: probable polygalacturonase-like [...   107   8e-22
gb|AFK48190.1| unknown [Lotus japonicus]                              107   1e-21
ref|XP_002516244.1| polygalacturonase, putative [Ricinus communi...   106   2e-21
ref|XP_003551103.1| PREDICTED: probable polygalacturonase-like i...   105   3e-21

>ref|XP_004161121.1| PREDICTED: probable polygalacturonase-like [Cucumis sativus]
          Length = 493

 Score =  107 bits (268), Expect = 8e-22
 Identities = 50/64 (78%), Positives = 54/64 (84%)
 Frame = -3

Query: 193 PFPVLRPFLFNLTDFGGKGDGTTLNTKAFERGVAAIAKLRKKGGGQLNVPAGYWLTAPFN 14
           P P LRP +FNLTDFG  GDG TLNTKAFE+ + AI+KLR KGGGQLNVPAG WLTAPFN
Sbjct: 66  PLPRLRPAVFNLTDFGAVGDGVTLNTKAFEKAILAISKLRTKGGGQLNVPAGRWLTAPFN 125

Query: 13  LTSH 2
           LTSH
Sbjct: 126 LTSH 129


>ref|XP_004144044.1| PREDICTED: probable polygalacturonase-like [Cucumis sativus]
          Length = 493

 Score =  107 bits (268), Expect = 8e-22
 Identities = 50/64 (78%), Positives = 54/64 (84%)
 Frame = -3

Query: 193 PFPVLRPFLFNLTDFGGKGDGTTLNTKAFERGVAAIAKLRKKGGGQLNVPAGYWLTAPFN 14
           P P LRP +FNLTDFG  GDG TLNTKAFE+ + AI+KLR KGGGQLNVPAG WLTAPFN
Sbjct: 66  PLPRLRPAVFNLTDFGAVGDGVTLNTKAFEKAILAISKLRTKGGGQLNVPAGRWLTAPFN 125

Query: 13  LTSH 2
           LTSH
Sbjct: 126 LTSH 129


>gb|AFK48190.1| unknown [Lotus japonicus]
          Length = 482

 Score =  107 bits (267), Expect = 1e-21
 Identities = 50/62 (80%), Positives = 54/62 (87%)
 Frame = -3

Query: 187 PVLRPFLFNLTDFGGKGDGTTLNTKAFERGVAAIAKLRKKGGGQLNVPAGYWLTAPFNLT 8
           P+LRP  FNLTDFGG GDG TLNT AFER V+AI+KLR+KGGGQLNVP G WLTAPFNLT
Sbjct: 57  PLLRPVAFNLTDFGGVGDGVTLNTVAFERAVSAISKLREKGGGQLNVPPGLWLTAPFNLT 116

Query: 7   SH 2
           SH
Sbjct: 117 SH 118


>ref|XP_002516244.1| polygalacturonase, putative [Ricinus communis]
           gi|223544730|gb|EEF46246.1| polygalacturonase, putative
           [Ricinus communis]
          Length = 494

 Score =  106 bits (265), Expect = 2e-21
 Identities = 50/64 (78%), Positives = 53/64 (82%)
 Frame = -3

Query: 193 PFPVLRPFLFNLTDFGGKGDGTTLNTKAFERGVAAIAKLRKKGGGQLNVPAGYWLTAPFN 14
           P P LRP  FNLTDFGG GDG TLNT+AFER V AI+KL KKGGGQLNVP G W+TAPFN
Sbjct: 67  PMPKLRPVAFNLTDFGGVGDGVTLNTEAFERAVLAISKLGKKGGGQLNVPPGRWVTAPFN 126

Query: 13  LTSH 2
           LTSH
Sbjct: 127 LTSH 130


>ref|XP_003551103.1| PREDICTED: probable polygalacturonase-like isoform 2 [Glycine max]
          Length = 491

 Score =  105 bits (263), Expect = 3e-21
 Identities = 48/64 (75%), Positives = 53/64 (82%)
 Frame = -3

Query: 193 PFPVLRPFLFNLTDFGGKGDGTTLNTKAFERGVAAIAKLRKKGGGQLNVPAGYWLTAPFN 14
           P P+LRP  FNLTDFGG GDG TLNT+AFER V+A++K  KKGG QLNVP G WLTAPFN
Sbjct: 65  PMPMLRPMAFNLTDFGGVGDGVTLNTEAFERAVSAVSKFGKKGGAQLNVPPGRWLTAPFN 124

Query: 13  LTSH 2
           LTSH
Sbjct: 125 LTSH 128


Top