BLASTX nr result

ID: Coptis25_contig00042898 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042898
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003630366.1| cyclase/dehydrase family protein [Medicago t...   132   4e-29
ref|XP_002273364.1| PREDICTED: uncharacterized protein LOC100262...   129   2e-28
dbj|BAJ93672.1| predicted protein [Hordeum vulgare subsp. vulgare]    124   6e-27
ref|XP_003559182.1| PREDICTED: uncharacterized protein LOC100844...   124   8e-27
ref|XP_002307063.1| predicted protein [Populus trichocarpa] gi|2...   123   1e-26

>ref|XP_003630366.1| cyclase/dehydrase family protein [Medicago truncatula]
           gi|355524388|gb|AET04842.1| cyclase/dehydrase family
           protein [Medicago truncatula]
          Length = 742

 Score =  132 bits (331), Expect = 4e-29
 Identities = 79/148 (53%), Positives = 85/148 (57%), Gaps = 13/148 (8%)
 Frame = +3

Query: 3   LSYEVNVIPRFNFPAIFLERIIRSDLPVNLKALARRAERNSGLNQKTLFLGRISAPTPEP 182
           LSYEVNVIPRFNFPAIFLERI+RSDLPVNL+ALA R ERN         LG    P PE 
Sbjct: 217 LSYEVNVIPRFNFPAIFLERIVRSDLPVNLRALAYRVERN--------LLGNQKLPQPED 268

Query: 183 AVVYPYLHST-------------GSLLEKDQLFSGEFKENQTXXXXXXXXXXXXXEFNRR 323
                 LH T             GSL E D+L  G+ KE                E N  
Sbjct: 269 D-----LHKTSLVVNGSSVKKINGSLCETDKLAPGQDKEG-LDTSISGSLPASSSELNSN 322

Query: 324 WGVFGKVCGLDKPCMVDEVHFRRFDGLL 407
           WG+FGKVC LDKPC+VDEVH RRFDGLL
Sbjct: 323 WGIFGKVCSLDKPCVVDEVHLRRFDGLL 350


>ref|XP_002273364.1| PREDICTED: uncharacterized protein LOC100262883 [Vitis vinifera]
          Length = 735

 Score =  129 bits (325), Expect = 2e-28
 Identities = 74/135 (54%), Positives = 86/135 (63%)
 Frame = +3

Query: 3   LSYEVNVIPRFNFPAIFLERIIRSDLPVNLKALARRAERNSGLNQKTLFLGRISAPTPEP 182
           LSYEVNVIPRFNFPAIFLERIIRSDLPVNL+ALA R+E+N   NQK  F+          
Sbjct: 210 LSYEVNVIPRFNFPAIFLERIIRSDLPVNLQALACRSEKNFEGNQKIPFIESSLGTASIA 269

Query: 183 AVVYPYLHSTGSLLEKDQLFSGEFKENQTXXXXXXXXXXXXXEFNRRWGVFGKVCGLDKP 362
            V  P +   G+ L  ++L  G FK++               E +  WGVFGKVC LD+P
Sbjct: 270 DVANPGIDLDGA-LSVEKLSPGVFKKSHA-SSSFDPLFQSSSELSSNWGVFGKVCKLDRP 327

Query: 363 CMVDEVHFRRFDGLL 407
           CMVDEVH RRFDGLL
Sbjct: 328 CMVDEVHLRRFDGLL 342


>dbj|BAJ93672.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 710

 Score =  124 bits (312), Expect = 6e-27
 Identities = 71/138 (51%), Positives = 83/138 (60%), Gaps = 3/138 (2%)
 Frame = +3

Query: 3   LSYEVNVIPRFNFPAIFLERIIRSDLPVNLKALARRAERNSGLNQK---TLFLGRISAPT 173
           L YEVNVIPRFNFPAIFLERIIRSDLPVNL ALA R+E+    N K   T F G  S P 
Sbjct: 196 LLYEVNVIPRFNFPAIFLERIIRSDLPVNLTALAFRSEKMYLENHKFGPTKFTGAESKP- 254

Query: 174 PEPAVVYPYLHSTGSLLEKDQLFSGEFKENQTXXXXXXXXXXXXXEFNRRWGVFGKVCGL 353
                    L+   + +E D + S +FKE                E N +WGV+G VC L
Sbjct: 255 ---------LNLRSATIENDVISSSKFKEAPASSGFGGVLASPPPELNGKWGVYGSVCRL 305

Query: 354 DKPCMVDEVHFRRFDGLL 407
           D+PC+VDE+H RRFDGLL
Sbjct: 306 DRPCVVDEIHLRRFDGLL 323


>ref|XP_003559182.1| PREDICTED: uncharacterized protein LOC100844212 [Brachypodium
           distachyon]
          Length = 713

 Score =  124 bits (311), Expect = 8e-27
 Identities = 67/137 (48%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
 Frame = +3

Query: 3   LSYEVNVIPRFNFPAIFLERIIRSDLPVNLKALARRAERNSGLNQKTLFLG--RISAPTP 176
           L YEVNVIPRFNFP+IFLERIIRSDLPVNL+ALA R+E+   L  + L  G  + +   P
Sbjct: 199 LLYEVNVIPRFNFPSIFLERIIRSDLPVNLRALAFRSEK---LYLENLKRGSTKSTGANP 255

Query: 177 EPAVVYPYLHSTGSLLEKDQLFSGEFKENQTXXXXXXXXXXXXXEFNRRWGVFGKVCGLD 356
           +P      L+   +++E D +FS +F E                E N +WG++G VC LD
Sbjct: 256 KP------LNFRSAIVENDNIFSSKFAEAPPSSGSGAVLASPSPELNSKWGIYGNVCSLD 309

Query: 357 KPCMVDEVHFRRFDGLL 407
           +PC+VDE+H RRFDGLL
Sbjct: 310 RPCVVDEIHLRRFDGLL 326


>ref|XP_002307063.1| predicted protein [Populus trichocarpa] gi|222856512|gb|EEE94059.1|
           predicted protein [Populus trichocarpa]
          Length = 727

 Score =  123 bits (309), Expect = 1e-26
 Identities = 70/135 (51%), Positives = 85/135 (62%)
 Frame = +3

Query: 3   LSYEVNVIPRFNFPAIFLERIIRSDLPVNLKALARRAERNSGLNQKTLFLGRISAPTPEP 182
           LSYEVNV+PR+NFPAIFLERII SDLPVNL+ALA RAER+   NQKT   G   + T   
Sbjct: 208 LSYEVNVMPRYNFPAIFLERIIGSDLPVNLRALACRAERDFEGNQKT---GITESETSMT 264

Query: 183 AVVYPYLHSTGSLLEKDQLFSGEFKENQTXXXXXXXXXXXXXEFNRRWGVFGKVCGLDKP 362
           A   P +   G+  EKD+L + + K++               + N  WGV GK C LD+ 
Sbjct: 265 ASTSPGMVLDGAFREKDKLSTEDLKQSY-PSSTFGPMLPPSNDLNNNWGVLGKACRLDRR 323

Query: 363 CMVDEVHFRRFDGLL 407
           CMVDEVH RR+DGLL
Sbjct: 324 CMVDEVHLRRYDGLL 338


Top