BLASTX nr result
ID: Coptis25_contig00042896
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00042896
(533 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 55 5e-11
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin... 44 6e-10
ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g... 43 1e-06
ref|XP_002313690.1| f-box family protein [Populus trichocarpa] g... 42 2e-06
ref|XP_002528428.1| conserved hypothetical protein [Ricinus comm... 40 4e-06
>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
predicted protein [Populus trichocarpa]
Length = 393
Score = 54.7 bits (130), Expect(3) = 5e-11
Identities = 34/104 (32%), Positives = 52/104 (50%)
Frame = -2
Query: 529 DVTYYNGHFYAIHNNGYVVAIKNLDLEGTHPYAELVIDHDPRKSMAACSYILDSSGDLLV 350
DV Y+NG FYA++ G +V D+ G P + PR+ Y++ S LL+
Sbjct: 215 DVIYFNGLFYAVNKAGQIVV---CDVNGNSPKVSFI--ETPRQIGGDMQYLVSSGDGLLL 269
Query: 349 VLRTVNVMKQDRDVNKYKTVGFNVLKLEFGTPNNNWVEINNLGD 218
V R ++ + + D+ YKT F V KL+ P W + +LGD
Sbjct: 270 VTRYLD-LDVEFDIFIYKTARFEVFKLDLNGP--RWERVTSLGD 310
Score = 32.7 bits (73), Expect(3) = 5e-11
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -1
Query: 212 LFLGYNSSFSLCSTDYSGCKSCKPNCIYFTD 120
LF+G NSS +L ++ SGC +CIY+TD
Sbjct: 313 LFIGENSSLALSASGLSGCMG---DCIYYTD 340
Score = 24.3 bits (51), Expect(3) = 5e-11
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 84 HDFGIFNLEDQSVEKF-LYPSDT 19
HD GIF L D S+E YP ++
Sbjct: 354 HDLGIFKLSDGSIEPLPCYPRNS 376
>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
Length = 393
Score = 43.9 bits (102), Expect(3) = 6e-10
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = -2
Query: 529 DVTYYNGHFYAIHNNGYVVAIKNLDLEGTHPYAELVIDHDPRKSMAACSYILDSSGDLLV 350
DV YNG F+A+ G +A+ + P ++ P Y + S+GD+L+
Sbjct: 206 DVVNYNGLFFAVSKGG-TIAVCDAGEGCFPPRVSIIQTTTPFGFAGDIHYAVFSAGDMLL 264
Query: 349 VLRTVNVMKQDRDVNK----YKTVGFNVLKLEFGTPNNNWVEINNLGDR 215
++R ++ D + Y+TVGF V K+ +G W + LG+R
Sbjct: 265 LIRVLDQDFSDHAGEESDLVYRTVGFEVFKMNWGL--LTWQRVETLGER 311
Score = 39.3 bits (90), Expect(3) = 6e-10
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = -1
Query: 212 LFLGYNSSFSLCSTDYSGCKSCKPNCIYFTD 120
LF+G NSS S C++D+ GC + +CIYFTD
Sbjct: 313 LFVGGNSSLSFCASDFVGCSA---DCIYFTD 340
Score = 24.6 bits (52), Expect(3) = 6e-10
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 84 HDFGIFNLEDQSVE 43
HD G+F L D+S+E
Sbjct: 354 HDLGVFRLRDKSIE 367
>ref|XP_002305539.1| f-box family protein [Populus trichocarpa]
gi|222848503|gb|EEE86050.1| f-box family protein
[Populus trichocarpa]
Length = 469
Score = 43.1 bits (100), Expect(2) = 1e-06
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Frame = -2
Query: 529 DVTYYNGHFYAIHNNGYVVAI---KNLDLEGTHPYAELVIDHDPRKSMAACSYILDSSGD 359
DV Y G FYA+ N G V + NL L G V D + Y+++S GD
Sbjct: 207 DVIVYKGRFYAVDNTGRTVVVAMDTNLGLVGNP-----VFGGDKK-------YLVESKGD 254
Query: 358 LLVVLRTVNVMKQD---------RDVNKY---KTVGFNVLKLEFGTPNNNWVEINNLGDR 215
LL+V +++ + +D+ +Y +TV F V KL W+E+N+L DR
Sbjct: 255 LLLVDMYLSIDSDEGLSIGHDVVQDLVQYMSERTVWFKVFKL--NEEGKCWIEVNDLEDR 312
Score = 34.3 bits (77), Expect(2) = 1e-06
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -1
Query: 212 LFLGYNSSFSLCSTDYSGCKSCKPNCIYFTDGSWGFFKKGYG 87
LFLG + +FS +++ SGCK NCI+F D F+ +G G
Sbjct: 314 LFLGDDLTFSASASELSGCKG---NCIFFNDDF--FYSRGEG 350
>ref|XP_002313690.1| f-box family protein [Populus trichocarpa]
gi|222850098|gb|EEE87645.1| f-box family protein
[Populus trichocarpa]
Length = 410
Score = 42.4 bits (98), Expect(2) = 2e-06
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Frame = -2
Query: 529 DVTYYNGHFYAIHNNGYVVAI---KNLDLEGTHPYAELVIDHDPRKSMAACSYILDSSGD 359
DV Y G FYA+ N G V + +L L G + V D + Y+++S GD
Sbjct: 207 DVIVYKGRFYAVDNTGRTVVVALDTDLGLVG-----DPVFGGDKK-------YLVESKGD 254
Query: 358 LLVVLRTVNVMKQD---------RDVNKY---KTVGFNVLKLEFGTPNNNWVEINNLGDR 215
LL+V +++ + +D+ +Y +TV F V KL +W+E+ NL DR
Sbjct: 255 LLLVDMYLSIDTDEGLSIGNDVVQDLVQYMSERTVRFKVFKL--NEEGKSWIEVKNLEDR 312
Score = 34.3 bits (77), Expect(2) = 2e-06
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -1
Query: 212 LFLGYNSSFSLCSTDYSGCKSCKPNCIYFTD 120
LFLG +S+FS +++ SGCK NCI+F D
Sbjct: 314 LFLGDDSTFSASASELSGCKG---NCIFFED 341
>ref|XP_002528428.1| conserved hypothetical protein [Ricinus communis]
gi|223532164|gb|EEF33970.1| conserved hypothetical
protein [Ricinus communis]
Length = 339
Score = 40.4 bits (93), Expect(2) = 4e-06
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Frame = -2
Query: 529 DVTYYNGHFYAIHNNGYVVAIK-NLDLEGTHPYAELVIDHDPRKSMAACSYILDSSGDLL 353
DV Y G+FYA+ N G V ++ N +L A V D + Y+++S GDLL
Sbjct: 145 DVIVYKGNFYAVDNTGRTVIVRLNTEL---GLIANPVFGGDKK-------YLVESLGDLL 194
Query: 352 VVLRTVNVMKQDRDVN-------------KYKTVGFNVLKLEFGTPNNNWVEINNLGDR 215
+V +++ + ++ +TV F V KL+ W+E+ +LGDR
Sbjct: 195 LVDMYLSIDTAEGGLSFGEEFLEHLAQYMSERTVRFKVFKLD--KEAQTWIEVKSLGDR 251
Score = 35.0 bits (79), Expect(2) = 4e-06
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -1
Query: 212 LFLGYNSSFSLCSTDYSGCKSCKPNCIYFTD 120
LFLG +S+FS +D SGCK NCI+F D
Sbjct: 253 LFLGDDSTFSASVSDLSGCKG---NCIFFVD 280