BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042819
         (262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76007.1| hypothetical protein VITISV_013341 [Vitis vinifera]   121   7e-26
ref|XP_002509520.1| pentatricopeptide repeat-containing protein,...    66   3e-09
gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]         64   2e-08
ref|XP_002316102.1| predicted protein [Populus trichocarpa] gi|2...    64   2e-08
ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containi...    63   2e-08

>emb|CAN76007.1| hypothetical protein VITISV_013341 [Vitis vinifera]
          Length = 666

 Score =  121 bits (303), Expect = 7e-26
 Identities = 53/87 (60%), Positives = 70/87 (80%)
 Frame = +2

Query: 2   IFDRMRGIQYPNDITWSAMISGYTQNYQAKEALCAFKQMRGECNELGIGLSPNGYTIASV 181
           +FDRMR     ND+TWSA+I+GY QN + K+AL  FK+MRGEC+E+G  LSP  +TI SV
Sbjct: 126 LFDRMREAHLANDVTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMGSPLSPMSHTITSV 185

Query: 182 FSACGQSRDLVIGEQVHGYTVKISAYI 262
           FSACGQ RD+++GEQ+HGY +KIS+Y+
Sbjct: 186 FSACGQLRDVILGEQIHGYVMKISSYV 212


>ref|XP_002509520.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549419|gb|EEF50907.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 413

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/67 (47%), Positives = 43/67 (64%)
 Frame = +2

Query: 47  WSAMISGYTQNYQAKEALCAFKQMRGECNELGIGLSPNGYTIASVFSACGQSRDLVIGEQ 226
           W+ MISGY QN+ A EAL  F++M  E      G  PNG TIASV S C +S  L +GE+
Sbjct: 217 WTTMISGYAQNFCANEALVLFERMVAE------GFEPNGPTIASVLSVCARSGSLDLGER 270

Query: 227 VHGYTVK 247
           +HG+ ++
Sbjct: 271 IHGFMIE 277


>gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 35/85 (41%), Positives = 50/85 (58%)
 Frame = +2

Query: 2   IFDRMRGIQYPNDITWSAMISGYTQNYQAKEALCAFKQMRGECNELGIGLSPNGYTIASV 181
           +FD+M      N +TW+A+I+GYT N Q  EAL  F +M      L  G  P+ YT+ ++
Sbjct: 135 LFDQM---PEKNVVTWTALITGYTVNSQLLEALEVFVEM------LEAGRYPSHYTLGAM 185

Query: 182 FSACGQSRDLVIGEQVHGYTVKISA 256
            +AC  S +  +G QVHGYT+K  A
Sbjct: 186 LNACSASNNADLGSQVHGYTIKYRA 210


>ref|XP_002316102.1| predicted protein [Populus trichocarpa] gi|222865142|gb|EEF02273.1|
           predicted protein [Populus trichocarpa]
          Length = 665

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 34/85 (40%), Positives = 50/85 (58%)
 Frame = +2

Query: 2   IFDRMRGIQYPNDITWSAMISGYTQNYQAKEALCAFKQMRGECNELGIGLSPNGYTIASV 181
           +FD + GI     ++W+AMI GYTQN   +EAL  F Q         + + PN  TIASV
Sbjct: 260 VFDELHGIDI---VSWTAMIVGYTQNGCPEEALKLFLQKEQ------VAVLPNDVTIASV 310

Query: 182 FSACGQSRDLVIGEQVHGYTVKISA 256
           FS+C Q  +L +G  +HG ++K+ +
Sbjct: 311 FSSCSQLLNLNLGRSIHGLSIKLGS 335


>ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 35/85 (41%), Positives = 50/85 (58%)
 Frame = +2

Query: 2   IFDRMRGIQYPNDITWSAMISGYTQNYQAKEALCAFKQMRGECNELGIGLSPNGYTIASV 181
           +FD M      N +TW+A+I+GYT N Q   AL  F +M      L +G  P+ YT+  +
Sbjct: 135 LFDEM---PEKNVVTWTALITGYTLNSQPVLALEVFVEM------LKLGRYPSDYTLGGM 185

Query: 182 FSACGQSRDLVIGEQVHGYTVKISA 256
            SAC  S ++ +G+QVHGYT+K  A
Sbjct: 186 LSACVASHNIDLGKQVHGYTIKYGA 210