BLASTX nr result

ID: Coptis25_contig00042754 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042754
         (217 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19672.3| unnamed protein product [Vitis vinifera]               72   5e-11
ref|XP_002283027.1| PREDICTED: eukaryotic peptide chain release ...    72   5e-11
ref|XP_002271656.1| PREDICTED: eukaryotic peptide chain release ...    71   1e-10
emb|CAN63440.1| hypothetical protein VITISV_020937 [Vitis vinifera]    71   1e-10
ref|XP_003518164.1| PREDICTED: eukaryotic peptide chain release ...    70   2e-10

>emb|CBI19672.3| unnamed protein product [Vitis vinifera]
          Length = 430

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 35/43 (81%), Positives = 39/43 (90%), Gaps = 2/43 (4%)
 Frame = +3

Query: 3   LEFVTNKSR--SEFCRGFGGIGGILRYQVDMRSFDELSGDSEH 125
           LEFVTNKS+  S+FCRGFGGIGGILRYQ+DMRSFDELS D E+
Sbjct: 383 LEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDDGEN 425


>ref|XP_002283027.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3
           [Vitis vinifera] gi|147780810|emb|CAN77215.1|
           hypothetical protein VITISV_036372 [Vitis vinifera]
          Length = 437

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 35/43 (81%), Positives = 39/43 (90%), Gaps = 2/43 (4%)
 Frame = +3

Query: 3   LEFVTNKSR--SEFCRGFGGIGGILRYQVDMRSFDELSGDSEH 125
           LEFVTNKS+  S+FCRGFGGIGGILRYQ+DMRSFDELS D E+
Sbjct: 390 LEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDDGEN 432


>ref|XP_002271656.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3
           [Vitis vinifera]
          Length = 437

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 2/43 (4%)
 Frame = +3

Query: 3   LEFVTNKSR--SEFCRGFGGIGGILRYQVDMRSFDELSGDSEH 125
           LEFVTNKS+  S+FCRGFGGIGGILRYQ+DMRSFDE+S D E+
Sbjct: 390 LEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEVSDDGEN 432


>emb|CAN63440.1| hypothetical protein VITISV_020937 [Vitis vinifera]
          Length = 437

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 2/43 (4%)
 Frame = +3

Query: 3   LEFVTNKSR--SEFCRGFGGIGGILRYQVDMRSFDELSGDSEH 125
           LEFVTNKS+  S+FCRGFGGIGGILRYQ+DMRSFDE+S D E+
Sbjct: 390 LEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEVSDDGEN 432


>ref|XP_003518164.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like
           [Glycine max]
          Length = 437

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 34/42 (80%), Positives = 38/42 (90%), Gaps = 2/42 (4%)
 Frame = +3

Query: 3   LEFVTNKSR--SEFCRGFGGIGGILRYQVDMRSFDELSGDSE 122
           LEFVTNKS+  S+FCRGFGGIGGILRYQ+D+RSFDELS D E
Sbjct: 390 LEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDDGE 431


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