BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042736
         (496 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321063.1| predicted protein [Populus trichocarpa] gi|2...   108   2e-33
ref|XP_002512800.1| DNA cross-link repair protein pso2/snm1, put...   110   6e-33
ref|XP_003548485.1| PREDICTED: DNA cross-link repair protein SNM...   107   8e-33
ref|XP_003624539.1| DNA cross-link repair protein SNM1 [Medicago...   104   1e-32
gb|EEE60929.1| hypothetical protein OsJ_14663 [Oryza sativa Japo...   104   4e-31

>ref|XP_002321063.1| predicted protein [Populus trichocarpa] gi|222861836|gb|EEE99378.1|
           predicted protein [Populus trichocarpa]
          Length = 382

 Score =  108 bits (270), Expect(2) = 2e-33
 Identities = 50/72 (69%), Positives = 62/72 (86%)
 Frame = -3

Query: 494 SSIKPETLKKYLDSFAYECTTVLAFRPTGWTYSETLGKQLDLIRPTSKGNITIYGVPYSE 315
           SS++ ETLK YL +   +   VLAFRPTGWTYSE LG++LDLIRP+++GNITIYGVPYSE
Sbjct: 279 SSLRYETLKDYLKNHVNQYAAVLAFRPTGWTYSEGLGRELDLIRPSTRGNITIYGVPYSE 338

Query: 314 HSSFSELREFVQ 279
           HSSF+ELR+FV+
Sbjct: 339 HSSFTELRDFVE 350



 Score = 59.3 bits (142), Expect(2) = 2e-33
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = -1

Query: 178 LQFLKPDRIIPTVNVGNAANIDKMQPYFREWLK 80
           ++FLKPD+IIPTVNVGN  N DKMQ YFREWLK
Sbjct: 349 VEFLKPDKIIPTVNVGNPDNRDKMQSYFREWLK 381


>ref|XP_002512800.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus
           communis] gi|223547811|gb|EEF49303.1| DNA cross-link
           repair protein pso2/snm1, putative [Ricinus communis]
          Length = 493

 Score =  110 bits (276), Expect(2) = 6e-33
 Identities = 51/72 (70%), Positives = 61/72 (84%)
 Frame = -3

Query: 494 SSIKPETLKKYLDSFAYECTTVLAFRPTGWTYSETLGKQLDLIRPTSKGNITIYGVPYSE 315
           SS++ ETLK YL  +  +   VLAFRPTGWTYSE +GK+LDLIRP SKGN+TIYGVPYSE
Sbjct: 390 SSLRVETLKDYLKKYINQYRAVLAFRPTGWTYSENVGKKLDLIRPISKGNVTIYGVPYSE 449

Query: 314 HSSFSELREFVQ 279
           HSSF+EL+EFV+
Sbjct: 450 HSSFTELKEFVE 461



 Score = 55.1 bits (131), Expect(2) = 6e-33
 Identities = 23/33 (69%), Positives = 29/33 (87%)
 Frame = -1

Query: 178 LQFLKPDRIIPTVNVGNAANIDKMQPYFREWLK 80
           ++FLKPD+IIPTVNVGN  N +KMQ +FREWL+
Sbjct: 460 VEFLKPDKIIPTVNVGNPTNREKMQSHFREWLE 492


>ref|XP_003548485.1| PREDICTED: DNA cross-link repair protein SNM1-like [Glycine max]
          Length = 505

 Score =  107 bits (267), Expect(2) = 8e-33
 Identities = 49/73 (67%), Positives = 61/73 (83%)
 Frame = -3

Query: 494 SSIKPETLKKYLDSFAYECTTVLAFRPTGWTYSETLGKQLDLIRPTSKGNITIYGVPYSE 315
           SS++ ETLK YL ++  + T +LAFRPTGWT+SE +   L+LI+P SKGNITIYGVPYSE
Sbjct: 402 SSLRVETLKDYLKTYKEQFTAILAFRPTGWTFSEKISNDLELIKPVSKGNITIYGVPYSE 461

Query: 314 HSSFSELREFVQV 276
           HSSFSEL++FVQV
Sbjct: 462 HSSFSELQDFVQV 474



 Score = 58.2 bits (139), Expect(2) = 8e-33
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = -1

Query: 178 LQFLKPDRIIPTVNVGNAANIDKMQPYFREWLK 80
           +Q L+PD+IIPTVNVGNAAN +KMQ YFR+WLK
Sbjct: 472 VQVLRPDKIIPTVNVGNAANREKMQSYFRDWLK 504


>ref|XP_003624539.1| DNA cross-link repair protein SNM1 [Medicago truncatula]
           gi|87241310|gb|ABD33168.1| DNA repair
           metallo-beta-lactamase [Medicago truncatula]
           gi|355499554|gb|AES80757.1| DNA cross-link repair
           protein SNM1 [Medicago truncatula]
          Length = 511

 Score =  104 bits (259), Expect(2) = 1e-32
 Identities = 48/72 (66%), Positives = 60/72 (83%)
 Frame = -3

Query: 494 SSIKPETLKKYLDSFAYECTTVLAFRPTGWTYSETLGKQLDLIRPTSKGNITIYGVPYSE 315
           SS++ ETLK+YL ++  + T+VLAFRPTGWT+SE +G  L LI+P S GNIT YGVPYSE
Sbjct: 408 SSLRIETLKEYLKTYKEQFTSVLAFRPTGWTFSEKIGNDLALIKPVSNGNITTYGVPYSE 467

Query: 314 HSSFSELREFVQ 279
           HSSF+ELR+FVQ
Sbjct: 468 HSSFTELRDFVQ 479



 Score = 60.8 bits (146), Expect(2) = 1e-32
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = -1

Query: 178 LQFLKPDRIIPTVNVGNAANIDKMQPYFREWLK 80
           +QFL+PD+IIPTVNVGNAAN +KMQ YFR+WLK
Sbjct: 478 VQFLRPDKIIPTVNVGNAANREKMQSYFRDWLK 510


>gb|EEE60929.1| hypothetical protein OsJ_14663 [Oryza sativa Japonica Group]
          Length = 517

 Score =  104 bits (260), Expect(2) = 4e-31
 Identities = 49/71 (69%), Positives = 58/71 (81%)
 Frame = -3

Query: 494 SSIKPETLKKYLDSFAYECTTVLAFRPTGWTYSETLGKQLDLIRPTSKGNITIYGVPYSE 315
           SS++ E L+KYL++       VLAFRPTGWT+SE  G QLDLI+P+S+G ITIYGVPYSE
Sbjct: 377 SSLRHENLQKYLETLKQRFLAVLAFRPTGWTFSEETGNQLDLIKPSSRGKITIYGVPYSE 436

Query: 314 HSSFSELREFV 282
           HSSFSELREFV
Sbjct: 437 HSSFSELREFV 447



 Score = 55.1 bits (131), Expect(2) = 4e-31
 Identities = 23/33 (69%), Positives = 29/33 (87%)
 Frame = -1

Query: 178 LQFLKPDRIIPTVNVGNAANIDKMQPYFREWLK 80
           + FL+P ++IPTVNVGNAA+ DKMQ +FREWLK
Sbjct: 447 VMFLRPQKVIPTVNVGNAASRDKMQAHFREWLK 479