BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042594
         (291 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   108   5e-22
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              107   1e-21
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   107   1e-21
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...   105   3e-21
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   103   1e-20

>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
           macrophyllum]
          Length = 1019

 Score =  108 bits (270), Expect = 5e-22
 Identities = 48/90 (53%), Positives = 69/90 (76%)
 Frame = -3

Query: 286 SEEKREVVIGKIPVMVGSNLCWMNGREKGECEFDHGGYFVIQGAKKMFVA*ERKCYKRLW 107
           SE+ R+V+IG+IPVM+ S+LCWMNG EK +C+FDHGGYF+I+GA+K F+A E+ C KRLW
Sbjct: 9   SEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQEQICLKRLW 68

Query: 106 VYEKPNWCIYFHSEMMKKLNVVVRLEELPP 17
           V   P+W + +  ++ K+  V ++LE  PP
Sbjct: 69  VSNSPSWTVAYR-DVSKRKRVYIKLE--PP 95


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  107 bits (267), Expect = 1e-21
 Identities = 48/91 (52%), Positives = 67/91 (73%)
 Frame = -3

Query: 283 EEKREVVIGKIPVMVGSNLCWMNGREKGECEFDHGGYFVIQGAKKMFVA*ERKCYKRLWV 104
           E+ R+++IG+IPVMV S LCWMNG E+G+CE+DHGGYF+I+GA+K F+A E+ C KRLWV
Sbjct: 222 EDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWV 281

Query: 103 YEKPNWCIYFHSEMMKKLNVVVRLEELPPSE 11
              P W + +   + K+  V V+LE  PP +
Sbjct: 282 SSNPTWMVAYR-PIWKRKRVYVKLE--PPKD 309


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  107 bits (267), Expect = 1e-21
 Identities = 48/91 (52%), Positives = 67/91 (73%)
 Frame = -3

Query: 283 EEKREVVIGKIPVMVGSNLCWMNGREKGECEFDHGGYFVIQGAKKMFVA*ERKCYKRLWV 104
           E+ R+++IG+IPVMV S LCWMNG E+G+CE+DHGGYF+I+GA+K F+A E+ C KRLWV
Sbjct: 186 EDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWV 245

Query: 103 YEKPNWCIYFHSEMMKKLNVVVRLEELPPSE 11
              P W + +   + K+  V V+LE  PP +
Sbjct: 246 SSNPTWMVAYR-PIWKRKRVYVKLE--PPKD 273


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
           predicted protein [Populus trichocarpa]
          Length = 1160

 Score =  105 bits (263), Expect = 3e-21
 Identities = 47/90 (52%), Positives = 67/90 (74%)
 Frame = -3

Query: 280 EKREVVIGKIPVMVGSNLCWMNGREKGECEFDHGGYFVIQGAKKMFVA*ERKCYKRLWVY 101
           E RE++IG+IPVMV S+LCW+   EKG+C+FDHGGYF+I+GA+K+F+A E+ C KRLW+ 
Sbjct: 162 ENREIIIGRIPVMVKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVFIAQEQICMKRLWIS 221

Query: 100 EKPNWCIYFHSEMMKKLNVVVRLEELPPSE 11
               W + + SE +K+  ++VRL EL   E
Sbjct: 222 NSQGWTVSYKSE-VKRNRLIVRLVELSKLE 250


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  103 bits (257), Expect = 1e-20
 Identities = 51/98 (52%), Positives = 65/98 (66%), Gaps = 5/98 (5%)
 Frame = -3

Query: 289 ESEEKREVVIGKIPVMVGSNLCWMNGREKGECEFDHGGYFVIQGAKKMFVA*ERKCYKRL 110
           E E KR+V+IG+IPVMV S LCWMNG +K +CEFDHGGYF+ +GA+K F+A E+ C KRL
Sbjct: 201 EVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGYFIAKGAEKTFIAQEQLCLKRL 260

Query: 109 WVYEKPNWCI-YFHSEMMK----KLNVVVRLEELPPSE 11
           WV   P W + Y   E  K    KL   ++LE +   E
Sbjct: 261 WVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGE 298