BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042573
         (242 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. l...    62   4e-08
ref|NP_173207.1| pentatricopeptide repeat-containing protein [Ar...    61   8e-08
dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]            61   1e-07
ref|NP_001078212.1| pentatricopeptide repeat-containing protein ...    61   1e-07
ref|XP_003595543.1| Pentatricopeptide repeat-containing protein ...    60   1e-07

>ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 659

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 31/76 (40%), Positives = 47/76 (61%)
 Frame = +1

Query: 13  LMRYRFVTCDSFTFLVVLRSVSTFGKIHIGKELHGLVLKMGCAERLIVQTAFIDMYCACG 192
           L++ + VT +  T   VL +VS  G + IGK +H  V++MG  + +IV T+ IDMYC CG
Sbjct: 277 LIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCG 336

Query: 193 LSSYGRLVFDKIVDKD 240
                RL FD++ +K+
Sbjct: 337 RVETARLAFDRMKNKN 352


>ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g17630 gi|8778465|gb|AAF79473.1|AC022492_17
           F1L3.33 [Arabidopsis thaliana]
           gi|332191495|gb|AEE29616.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 731

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 28/75 (37%), Positives = 46/75 (61%)
 Frame = +1

Query: 16  MRYRFVTCDSFTFLVVLRSVSTFGKIHIGKELHGLVLKMGCAERLIVQTAFIDMYCACGL 195
           M++  V  +S T   +L   +    +++G+E+HG V++   +E ++VQ A ++MY  CGL
Sbjct: 425 MQFSKVLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGL 484

Query: 196 SSYGRLVFDKIVDKD 240
            S G LVF+ I DKD
Sbjct: 485 LSEGSLVFEAIRDKD 499


>dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/76 (39%), Positives = 47/76 (61%)
 Frame = +1

Query: 13  LMRYRFVTCDSFTFLVVLRSVSTFGKIHIGKELHGLVLKMGCAERLIVQTAFIDMYCACG 192
           L++ + VT ++ T   VL +VS  G + IGK +H  V++MG  + +IV T+ IDMYC CG
Sbjct: 277 LVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCG 336

Query: 193 LSSYGRLVFDKIVDKD 240
                R  FD++ +K+
Sbjct: 337 RVETARKAFDRMKNKN 352


>ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
           gi|9279668|dbj|BAB01225.1| selenium-binding protein-like
           [Arabidopsis thaliana] gi|332643694|gb|AEE77215.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 659

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/76 (39%), Positives = 47/76 (61%)
 Frame = +1

Query: 13  LMRYRFVTCDSFTFLVVLRSVSTFGKIHIGKELHGLVLKMGCAERLIVQTAFIDMYCACG 192
           L++ + VT ++ T   VL +VS  G + IGK +H  V++MG  + +IV T+ IDMYC CG
Sbjct: 277 LVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCG 336

Query: 193 LSSYGRLVFDKIVDKD 240
                R  FD++ +K+
Sbjct: 337 RVETARKAFDRMKNKN 352


>ref|XP_003595543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484591|gb|AES65794.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 958

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 26/77 (33%), Positives = 47/77 (61%)
 Frame = +1

Query: 7   YTLMRYRFVTCDSFTFLVVLRSVSTFGKIHIGKELHGLVLKMGCAERLIVQTAFIDMYCA 186
           Y + R R V  D +TF  +L + +  G +  GKE+HG V+ +G    ++V+++ +DMY  
Sbjct: 578 YVMNRVRGVVPDGYTFGTILTACANLGLLRQGKEVHGKVVGLGFGGNVVVESSLLDMYGK 637

Query: 187 CGLSSYGRLVFDKIVDK 237
           CG   + R+VF+++ D+
Sbjct: 638 CGCVRHSRIVFERLSDE 654