BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042560
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containi...   152   2e-35
ref|XP_002523781.1| pentatricopeptide repeat-containing protein,...   148   4e-34
ref|XP_002306231.1| predicted protein [Populus trichocarpa] gi|2...   140   1e-31
ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containi...   139   3e-31
gb|AAM15176.1| putative selenium-binding protein [Arabidopsis th...   139   3e-31

>ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  152 bits (385), Expect = 2e-35
 Identities = 74/122 (60%), Positives = 93/122 (76%)
 Frame = -3

Query: 367 LKAFPAVSPLQIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWS 188
           L A  AVSP QIHA V+KTNY+  PS+GT+L D+Y K+    +A  +FELIDEKD VAWS
Sbjct: 403 LTANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWS 462

Query: 187 AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIK 8
           AMLSGYAQ+ + EGAVK+F ++ KEG++PN F  +SV++AC  P ASVEQGKQ H  SIK
Sbjct: 463 AMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIK 522

Query: 7   TG 2
           +G
Sbjct: 523 SG 524



 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 47/119 (39%), Positives = 73/119 (61%)
 Frame = -3

Query: 358 FPAVSPLQIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAML 179
           F  +   Q+H Q IK  + +D S+GTSL+D Y+K +  +D   VF+ +  K+ V+W+++L
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165

Query: 178 SGYAQVQNPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTG 2
           +GY Q    E A+KLF++M  EGIKPN F   +V+        +VE+G Q H + IK+G
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAAD-GAVEKGVQVHTMVIKSG 223



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
 Frame = -3

Query: 337 QIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDE-KDSVAWSAMLSGYAQV 161
           Q+H QVIK   D D +I T+L+  Y K     DA  +F ++   ++ V+W+A++SGY Q 
Sbjct: 315 QLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQN 374

Query: 160 QNPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIKT 5
              + A+ LF +M +EG++PN F  +++++A      S     Q H + +KT
Sbjct: 375 GRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPS-----QIHALVVKT 421



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 35/113 (30%), Positives = 60/113 (53%)
 Frame = -3

Query: 340 LQIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQV 161
           +Q+H  VIK+  D    +G S+++ Y K  M  DA  VF+ ++ +++V+W++M++G+   
Sbjct: 213 VQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTN 272

Query: 160 QNPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTG 2
                A +LF  M  EG+K    +  +VI  C   +  +   KQ H   IK G
Sbjct: 273 GLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN-IKEMSFAKQLHCQVIKNG 324



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/110 (29%), Positives = 60/110 (54%)
 Frame = -3

Query: 337 QIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQ 158
           Q H+  IK+ +     + ++L+  Y K    + A  VF+   ++D V+W++M+SGYAQ  
Sbjct: 515 QFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHG 574

Query: 157 NPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIK 8
             + ++K+F EM  + ++ +      VISACT     V +G++   + +K
Sbjct: 575 CGKKSLKIFEEMRSKNLELDGITFIGVISACT-HAGLVNEGQRYFDLMVK 623


>ref|XP_002523781.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536869|gb|EEF38507.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 661

 Score =  148 bits (374), Expect = 4e-34
 Identities = 70/121 (57%), Positives = 93/121 (76%)
 Frame = -3

Query: 367 LKAFPAVSPLQIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWS 188
           L A P VSP ++HAQVIK++Y+K PS+GT+LLD Y+KL    +A  VFE ID+KD VAWS
Sbjct: 408 LAAQPVVSPFEVHAQVIKSDYEKSPSVGTALLDAYVKLGNLNEASKVFERIDDKDIVAWS 467

Query: 187 AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIK 8
           AM++GYAQ  + EGAVK+  +M K+G++PN +  +SVI+ACT P A+VEQGKQ H  SIK
Sbjct: 468 AMVAGYAQTGDTEGAVKILIQMAKKGVEPNEYTFSSVINACTAPTAAVEQGKQFHAWSIK 527

Query: 7   T 5
           +
Sbjct: 528 S 528



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 39/113 (34%), Positives = 67/113 (59%)
 Frame = -3

Query: 340 LQIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQV 161
           +Q+H   +K+ + +D S+GTSL+D Y+K +  ++   VF+ ++E++ V+W+++L GYA  
Sbjct: 116 IQVHDYCVKSGFLEDISVGTSLVDMYMKSEYVEEGKRVFDEMEERNVVSWTSLLVGYAHN 175

Query: 160 QNPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTG 2
                A++ F EM    IKPN F   +V+ A     A  ++G Q H + IK G
Sbjct: 176 GLNMEALECFFEMQAGAIKPNPFTFATVLGALADSKAIADKGVQIHTMVIKNG 228



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/91 (35%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
 Frame = -3

Query: 337 QIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELI-DEKDSVAWSAMLSGYAQV 161
           Q+H QV+K  ++ D +I T+L+  Y K +   DA  +F ++   ++ V+W+A++SG+ Q 
Sbjct: 320 QLHGQVLKGGFEYDHNIRTALMVAYNKGREIDDAFKIFSMMYGIRNVVSWTAIISGHLQN 379

Query: 160 QNPEGAVKLFTEMLKEGIKPNAFVLTSVISA 68
              E AV LF EM +EG++PN +  +++++A
Sbjct: 380 GLAEQAVNLFCEMSREGVRPNDYTFSTILAA 410



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 34/113 (30%), Positives = 63/113 (55%)
 Frame = -3

Query: 340 LQIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQV 161
           +QIH  VIK  ++    +  SL++ Y K  M K+A  VF+ +  +D+++W++M++GY   
Sbjct: 218 VQIHTMVIKNGFEATIFVCNSLINMYSKSGMVKNAKAVFDNMVTRDAISWNSMVAGYVAN 277

Query: 160 QNPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTG 2
                A+++F  +   G+K   F+ +SVI +C   +  +   +Q HG  +K G
Sbjct: 278 GLYLEAIEMFYHLRLAGVKLTNFIFSSVIKSCAN-IKELGFARQLHGQVLKGG 329



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 30/92 (32%), Positives = 51/92 (55%)
 Frame = -3

Query: 337 QIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQ 158
           Q HA  IK+ ++    + ++L+  Y K    + A  VF     +D V+W++M+SGYAQ  
Sbjct: 520 QFHAWSIKSRFNDALCVSSALVTMYAKRGEIESANEVFRRQGVRDLVSWNSMVSGYAQHG 579

Query: 157 NPEGAVKLFTEMLKEGIKPNAFVLTSVISACT 62
           +   A+++F EM  + ++ +      VISACT
Sbjct: 580 HARKALEVFKEMQDQNLELDGVTFIGVISACT 611


>ref|XP_002306231.1| predicted protein [Populus trichocarpa] gi|222849195|gb|EEE86742.1|
           predicted protein [Populus trichocarpa]
          Length = 480

 Score =  140 bits (353), Expect = 1e-31
 Identities = 67/121 (55%), Positives = 86/121 (71%)
 Frame = -3

Query: 367 LKAFPAVSPLQIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWS 188
           L A P VSP ++HAQ IK NY K PS+GT+LLD Y+K     +A  VF+ I+EKD VAWS
Sbjct: 17  LTAQPGVSPFEMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEKDIVAWS 76

Query: 187 AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIK 8
           AM+ GYAQ+ + EGAV++F +M KE IKPN +  + +I+AC  P A VEQGKQ H  SIK
Sbjct: 77  AMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIK 136

Query: 7   T 5
           +
Sbjct: 137 S 137



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 31/92 (33%), Positives = 54/92 (58%)
 Frame = -3

Query: 337 QIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQ 158
           Q+HA  IK+ ++    + ++LL  Y K    + A  VF+   E+D V+W++++SGYAQ  
Sbjct: 129 QLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHG 188

Query: 157 NPEGAVKLFTEMLKEGIKPNAFVLTSVISACT 62
               A+++F EM ++ ++ +      VISACT
Sbjct: 189 YGRKALEVFEEMQRQNLEMDGVTFIGVISACT 220


>ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  139 bits (349), Expect = 3e-31
 Identities = 67/115 (58%), Positives = 85/115 (73%)
 Frame = -3

Query: 352 AVSPLQIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSG 173
           AV   +IHA+VIKTNY+K  S+GT+LLD ++K+    DAV VFELI+ KD +AWSAML+G
Sbjct: 418 AVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAG 477

Query: 172 YAQVQNPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIK 8
           YAQ    E A K+F ++ +EGIKPN F   S+I+ACT P ASVEQGKQ H  +IK
Sbjct: 478 YAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIK 532



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 35/112 (31%), Positives = 63/112 (56%)
 Frame = -3

Query: 337 QIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQ 158
           Q+H Q +K       S+G SL+D Y K    +D   VF+ + ++D V+W+++L+GY+  +
Sbjct: 123 QVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNR 182

Query: 157 NPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTG 2
             +   +LF  M  EG +P+ + +++VI+A      +V  G Q H + +K G
Sbjct: 183 FNDQVWELFCLMQVEGYRPDYYTVSTVIAALAN-QGAVAIGMQIHALVVKLG 233



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/91 (35%), Positives = 51/91 (56%)
 Frame = -3

Query: 337 QIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQ 158
           Q HA  IK   +    + +SL+  Y K    + A  +F+   E+D V+W++M+SGYAQ  
Sbjct: 525 QFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHG 584

Query: 157 NPEGAVKLFTEMLKEGIKPNAFVLTSVISAC 65
             + A+++F EM K  ++ +A     VISAC
Sbjct: 585 QAKKALEVFEEMQKRNLEVDAITFIGVISAC 615



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/89 (33%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
 Frame = -3

Query: 334 IHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSV-AWSAMLSGYAQVQ 158
           +H + +K+    + ++ T+L+    K K   DA ++F L+    SV +W+AM+SGY Q  
Sbjct: 326 LHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNG 385

Query: 157 NPEGAVKLFTEMLKEGIKPNAFVLTSVIS 71
           + + AV LF+ M +EG+KPN F  +++++
Sbjct: 386 DTDQAVNLFSLMRREGVKPNHFTYSTILT 414



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 31/92 (33%), Positives = 50/92 (54%)
 Frame = -3

Query: 340 LQIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQV 161
           +QIHA V+K  ++ +  +  SL+    K  M +DA  VF+ ++ KDSV+W++M++G+   
Sbjct: 223 MQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVIN 282

Query: 160 QNPEGAVKLFTEMLKEGIKPNAFVLTSVISAC 65
                A + F  M   G KP      SVI +C
Sbjct: 283 GQDLEAFETFNNMQLAGAKPTHATFASVIKSC 314


>gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  139 bits (349), Expect = 3e-31
 Identities = 63/121 (52%), Positives = 87/121 (71%)
 Frame = -3

Query: 367 LKAFPAVSPLQIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWS 188
           L A P +SP ++HAQV+KTNY++  ++GT+LLD Y+KL   ++A  VF  ID+KD VAWS
Sbjct: 8   LTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 67

Query: 187 AMLSGYAQVQNPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIK 8
           AML+GYAQ    E A+K+F E+ K GIKPN F  +S+++ C    AS+ QGKQ HG +IK
Sbjct: 68  AMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK 127

Query: 7   T 5
           +
Sbjct: 128 S 128



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 37/110 (33%), Positives = 57/110 (51%)
 Frame = -3

Query: 337 QIHAQVIKTNYDKDPSIGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQ 158
           Q H   IK+  D    + ++LL  Y K    + A  VF+   EKD V+W++M+SGYAQ  
Sbjct: 120 QFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHG 179

Query: 157 NPEGAVKLFTEMLKEGIKPNAFVLTSVISACTGPMASVEQGKQCHGISIK 8
               A+ +F EM K  +K +      V +ACT     VE+G++   I ++
Sbjct: 180 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACT-HAGLVEEGEKYFDIMVR 228