BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042526
         (363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containi...   211   5e-53
ref|XP_002512534.1| pentatricopeptide repeat-containing protein,...   199   3e-49
ref|XP_002330073.1| predicted protein [Populus trichocarpa] gi|2...   193   1e-47
ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containi...   192   2e-47
ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containi...   192   2e-47

>ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  211 bits (537), Expect = 5e-53
 Identities = 100/120 (83%), Positives = 112/120 (93%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 182
           +ISGYAQHD FSETLALFHEMQL  IRPDET+LVSVISACTHLAAL+QGKW+HAYI+K+ 
Sbjct: 407 VISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNG 466

Query: 181 LKINTILGTTLIDMYMKCGCVENALEIFQGMEDKGVSSWNAVILGLAVNGLVEESLDKFS 2
           LK+N ILGTTL+DMYMKCGCVENALE+F GME+KGVSSWNA+I+GLAVNGLVE SLD FS
Sbjct: 467 LKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFS 526



 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 31/150 (20%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 182
           +ISGY Q+  + E L +F EM   G+R DE ++VSV+SAC HL+ ++ GK IH  + +  
Sbjct: 275 LISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMG 334

Query: 181 LKINTILGTTLIDMY-------------------------------MKCGCVENALEIFQ 95
           ++    L   LI MY                               MKCG VE A  +F 
Sbjct: 335 IESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFD 394

Query: 94  GMEDKGVSSWNAVILGLAVNGLVEESLDKF 5
            M +K + SW+AVI G A +    E+L  F
Sbjct: 395 VMPEKDIVSWSAVISGYAQHDCFSETLALF 424



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 33/115 (28%), Positives = 52/115 (45%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 182
           M+  Y Q +   + L L+  M    + PD      V+ AC        GK IH ++ K  
Sbjct: 112 MMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVG 171

Query: 181 LKINTILGTTLIDMYMKCGCVENALEIFQGMEDKGVSSWNAVILGLAVNGLVEES 17
              +  +  TLI+MY  CG + +A ++F         SWN+++ G    G VEE+
Sbjct: 172 FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEA 226


>ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548495|gb|EEF49986.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 444

 Score =  199 bits (505), Expect = 3e-49
 Identities = 94/120 (78%), Positives = 108/120 (90%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 182
           MISGYAQHD F+ETLALF EMQL G++PDET LVSV+SACTHLAAL+QGKWIH Y++K+ 
Sbjct: 262 MISGYAQHDRFAETLALFQEMQLDGVKPDETTLVSVVSACTHLAALDQGKWIHLYLRKNG 321

Query: 181 LKINTILGTTLIDMYMKCGCVENALEIFQGMEDKGVSSWNAVILGLAVNGLVEESLDKFS 2
           LKIN ILGTTLIDMYMK GCVE+ALE+F GM++KGVS+WNAVILGLA+NGLV  SLD FS
Sbjct: 322 LKINVILGTTLIDMYMKFGCVEDALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFS 381



 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 41/115 (35%), Positives = 64/115 (55%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 182
           +ISGY Q+  + E L  F +M   GI  DE ++VSV+SAC HL A++ GK +H+   K  
Sbjct: 130 LISGYEQNGRYEEALVTFGKMNAYGIMVDEVVVVSVLSACAHLFAVKTGKLVHSLAVKIG 189

Query: 181 LKINTILGTTLIDMYMKCGCVENALEIFQGMEDKGVSSWNAVILGLAVNGLVEES 17
           ++    L   LI MY  C  +++A ++F         SWN++I G    G +E++
Sbjct: 190 IESYVNLQNALIHMYSSCREIDSAQKLFNVGYSLDQISWNSMISGYLKCGEIEKA 244


>ref|XP_002330073.1| predicted protein [Populus trichocarpa] gi|222871498|gb|EEF08629.1|
           predicted protein [Populus trichocarpa]
          Length = 793

 Score =  193 bits (491), Expect = 1e-47
 Identities = 91/120 (75%), Positives = 110/120 (91%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 182
           MISGYAQ D F+ETL LF EMQ++G +PDET+LVSVISACTHLAAL+QGKWIHAYI+K+ 
Sbjct: 392 MISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNG 451

Query: 181 LKINTILGTTLIDMYMKCGCVENALEIFQGMEDKGVSSWNAVILGLAVNGLVEESLDKFS 2
           LKIN ILGTTLI+MYMK GCVE+ALE+F+G+E+KGVS+WNA+ILGLA+NGLV++SL  FS
Sbjct: 452 LKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFS 511



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 31/150 (20%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 182
           +IS Y Q++ + E L LF EM   GI  DE +++SV+SAC+ L  +  GK +H  + K  
Sbjct: 260 LISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVG 319

Query: 181 LKINTILGTTLIDMY-------------------------------MKCGCVENALEIFQ 95
           ++    L   LI MY                               +KCG +E A  +F 
Sbjct: 320 IETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFD 379

Query: 94  GMEDKGVSSWNAVILGLAVNGLVEESLDKF 5
            M DK   SW+A+I G A      E+L  F
Sbjct: 380 SMPDKDNVSWSAMISGYAQQDRFTETLVLF 409



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 31/119 (26%), Positives = 57/119 (47%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 182
           M+ GY Q +   + + ++  M    +  D      +  +C+   A   GK I  ++ K  
Sbjct: 97  MMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVG 156

Query: 181 LKINTILGTTLIDMYMKCGCVENALEIFQGMEDKGVSSWNAVILGLAVNGLVEESLDKF 5
              +  +  TLI+MY  CG + +A ++F G     + SWN+++ G  + G VEE+ D +
Sbjct: 157 FDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVY 215


>ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  192 bits (488), Expect = 2e-47
 Identities = 92/120 (76%), Positives = 104/120 (86%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 182
           MISGYAQ+D F ETLALF EMQ+ G +PDET LVSVISAC  LAALEQGKW+HAYIK++ 
Sbjct: 479 MISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNG 538

Query: 181 LKINTILGTTLIDMYMKCGCVENALEIFQGMEDKGVSSWNAVILGLAVNGLVEESLDKFS 2
           L IN ILGTTLIDMYMKCGCVE ALE+F GM +KG+S+WNA+ILGLA+NGLVE SLD FS
Sbjct: 539 LTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFS 598



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 31/150 (20%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHA------ 200
           +I+ + Q++ + E +  F  M   G+  DE + VS +SAC +L  +  GK IH+      
Sbjct: 347 LIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIG 406

Query: 199 ---YIKKSNLKI----------------------NTILGTTLIDMYMKCGCVENALEIFQ 95
              YI   N  I                      + I   ++I  Y+KC  V+NA  IF 
Sbjct: 407 TESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFD 466

Query: 94  GMEDKGVSSWNAVILGLAVNGLVEESLDKF 5
            M +K V SW+++I G A N L +E+L  F
Sbjct: 467 SMPEKDVVSWSSMISGYAQNDLFDETLALF 496


>ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  192 bits (488), Expect = 2e-47
 Identities = 92/120 (76%), Positives = 104/120 (86%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHAYIKKSN 182
           MISGYAQ+D F ETLALF EMQ+ G +PDET LVSVISAC  LAALEQGKW+HAYIK++ 
Sbjct: 344 MISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNG 403

Query: 181 LKINTILGTTLIDMYMKCGCVENALEIFQGMEDKGVSSWNAVILGLAVNGLVEESLDKFS 2
           L IN ILGTTLIDMYMKCGCVE ALE+F GM +KG+S+WNA+ILGLA+NGLVE SLD FS
Sbjct: 404 LTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFS 463



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 31/150 (20%)
 Frame = -3

Query: 361 MISGYAQHDHFSETLALFHEMQLQGIRPDETMLVSVISACTHLAALEQGKWIHA------ 200
           +I+ + Q++ + E +  F  M   G+  DE + VS +SAC +L  +  GK IH+      
Sbjct: 212 LIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIG 271

Query: 199 ---YIKKSNLKI----------------------NTILGTTLIDMYMKCGCVENALEIFQ 95
              YI   N  I                      + I   ++I  Y+KC  V+NA  IF 
Sbjct: 272 TESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFD 331

Query: 94  GMEDKGVSSWNAVILGLAVNGLVEESLDKF 5
            M +K V SW+++I G A N L +E+L  F
Sbjct: 332 SMPEKDVVSWSSMISGYAQNDLFDETLALF 361