BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042496
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    81   1e-13
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    79   3e-13
emb|CAN63473.1| hypothetical protein VITISV_044374 [Vitis vinifera]    74   9e-12
emb|CAN61945.1| hypothetical protein VITISV_032942 [Vitis vinifera]    74   2e-11
emb|CAN81579.1| hypothetical protein VITISV_023185 [Vitis vinifera]    73   3e-11

>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 41/122 (33%), Positives = 69/122 (56%)
 Frame = +3

Query: 3   KLKQVKESLKVWNKKHYRRLQESMTSTISQLNWIQSLPPNPHNTVSEACLQLQLDRLMLS 182
           KL+QV   LK WN++ +  +++ + S   +L+ +Q  PP  +       ++  LD ++  
Sbjct: 560 KLEQVAGGLKRWNQETFGSVKKKVASLREELDVLQRQPPTSNIICKRNEVECLLDGVLER 619

Query: 183 EEMKWRDKSRVCYLKCGDQSTKFFHLSTLDRKRQNGIYCIKNESGDWLYNQSDIGNHIVS 362
           EE+ W+ ++RV + KCGD++T+FFH +   R R N I  I  E   W  + +DIG   VS
Sbjct: 620 EELLWKQRARVSWFKCGDRNTQFFHQTAKQRGRSNRICGILGEDNRWRSDVTDIGCVFVS 679

Query: 363 FF 368
           +F
Sbjct: 680 YF 681


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 37/117 (31%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
 Frame = +3

Query: 21   ESLKVWNKKHYRRLQESMTSTISQLNWI-QSLPPNPHNTVSEACLQLQLDRLMLSEEMKW 197
            ++LK+W+K+ +      +   +S +  + QS PP+ H+ ++   L  Q+ +L   +EM W
Sbjct: 888  KALKMWSKEKFSNPSVQVADLLSDIEKLHQSNPPDAHHQIN--ILTDQVTKLWTQDEMYW 945

Query: 198  RDKSRVCYLKCGDQSTKFFHLSTLDRKRQNGIYCIKNESGDWLYNQSDIGNHIVSFF 368
              +SRV +LK GDQ++ FFH +T+ R++ N I  +K++ G+WL +++D+    + +F
Sbjct: 946  HQRSRVNWLKLGDQNSSFFHQTTIQRRQYNKIVRLKDDHGNWLDSEADVALQFLDYF 1002


>emb|CAN63473.1| hypothetical protein VITISV_044374 [Vitis vinifera]
          Length = 724

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
 Frame = +3

Query: 3   KLKQVKESLKVWNKKHYRRLQESMTSTISQLNWIQSLPPNPHNTVSEACLQLQ----LDR 170
           K+K++K+ LKVWNK+ + RL+ +  S + Q+++   +    + TV EA L+ +      +
Sbjct: 32  KMKEIKKKLKVWNKEVFGRLETNKASALEQVDFWDQVESERNLTVEEADLKKEAKDSFKK 91

Query: 171 LMLSEEMKWRDKSRVCYLKCGDQSTKFFHLSTLDRKRQNGIYCIKNESGDWLYNQSDIGN 350
            +L EE  WR   R  +LK GD++T FFH      +R N +  IK  +G+WL  + ++  
Sbjct: 92  WVLLEEAHWRQHLREIWLKEGDRNTGFFHRMASAHRRNNAMGRIK-VNGEWLVEEQEVRE 150

Query: 351 HIVSFF 368
            +V+ F
Sbjct: 151 GVVNSF 156


>emb|CAN61945.1| hypothetical protein VITISV_032942 [Vitis vinifera]
          Length = 712

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 41/126 (32%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
 Frame = +3

Query: 3   KLKQVKESLKVWNKKHYRRLQESMTSTISQLNWIQSLPPNPHNTVSEACLQLQ----LDR 170
           K+K++K++LKVWNK+ + RL+ +  S + Q+++   +      TV EA L+ +      +
Sbjct: 218 KMKEIKKNLKVWNKEVFGRLETNKASALQQVDFWDRVESERILTVEEAELKKEAKDSFKK 277

Query: 171 LMLSEEMKWRDKSRVCYLKCGDQSTKFFHLSTLDRKRQNGIYCIKNESGDWLYNQSDIGN 350
            +L EE  WR  SR  +L+ GD++T FFH      +R N +  IK  +G+WL  + ++  
Sbjct: 278 WVLLEEAHWRQHSREIWLREGDRNTGFFHRMASAHRRNNAMDKIK-VNGEWLVEEQEVRE 336

Query: 351 HIVSFF 368
            +V+ F
Sbjct: 337 GVVNSF 342


>emb|CAN81579.1| hypothetical protein VITISV_023185 [Vitis vinifera]
          Length = 1232

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
 Frame = +3

Query: 3   KLKQVKESLKVWNKKHYRRLQESMTSTISQLNWIQSLPPNPHNTVSEACLQLQ----LDR 170
           K+K++K+ LKVWNK+ + RL+ +  S + QL++   +      ++ EA L+ +      +
Sbjct: 158 KMKEIKKKLKVWNKEVFGRLETNKASALXQLDFWDRVESERILSMEEAELKKEAKDSFKK 217

Query: 171 LMLSEEMKWRDKSRVCYLKCGDQSTKFFHLSTLDRKRQNGIYCIKNESGDWLYNQSDIGN 350
            +L EE  WR  SR  +LK GD++T FFH      +R N +  IK  +G+WL  + ++  
Sbjct: 218 WVLLEEAHWRQHSREIWLKDGDRNTGFFHRMASAHRRNNAMDRIK-VNGEWLVEEQEVRE 276

Query: 351 HIVSFF 368
            +V+ F
Sbjct: 277 GVVNSF 282