BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042418
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77256.1| hypothetical protein VITISV_008352 [Vitis vinifera]    87   1e-15
gb|AAG51046.1|AC069473_8 gypsy/Ty-3 retroelement polyprotein; 69...    85   1e-15
gb|AFJ66186.1| hypothetical protein 11M19.5 [Arabidopsis halleri]      74   1e-14
gb|AAP54937.2| retrotransposon protein, putative, unclassified [...    82   3e-14
emb|CAD40278.2| OSJNBb0062H02.17 [Oryza sativa Japonica Group] g...    80   4e-14

>emb|CAN77256.1| hypothetical protein VITISV_008352 [Vitis vinifera]
          Length = 1365

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 42/81 (51%), Positives = 58/81 (71%)
 Frame = -3

Query: 264  EAQSRMKKIYDRHHTDREFVEGDWVYLKLQP*HQTSLSMRKNLKLSPKYYGPFKVLKKIG 85
            +AQ+RMK  YD+   +REFV GDW+YL+LQP  Q  L++R++ KLSP++YGP+ VL++IG
Sbjct: 1210 QAQARMKTAYDQGRVEREFVVGDWIYLRLQPYRQNLLALRRSHKLSPRFYGPYLVLERIG 1269

Query: 84   AVAYKLGTSDRYPNSSSVPCF 22
             VAY+L   D  P S   P F
Sbjct: 1270 LVAYRL---DLPPGSKIHPVF 1287


>gb|AAG51046.1|AC069473_8 gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis
            thaliana] gi|10998138|dbj|BAB03109.1| retroelement pol
            polyprotein [Arabidopsis thaliana]
          Length = 1499

 Score = 84.7 bits (208), Expect(2) = 1e-15
 Identities = 39/65 (60%), Positives = 50/65 (76%)
 Frame = -3

Query: 261  AQSRMKKIYDRHHTDREFVEGDWVYLKLQP*HQTSLSMRKNLKLSPKYYGPFKVLKKIGA 82
            AQ RMK+  D+H T+REF  GD+VY+KLQP  Q S+ MR N KLSPKY+GP+K++ + G 
Sbjct: 1345 AQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGE 1404

Query: 81   VAYKL 67
            VAYKL
Sbjct: 1405 VAYKL 1409



 Score = 22.7 bits (47), Expect(2) = 1e-15
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 92   KLGQLLTS*ELPTGTRIHLVFHVS 21
            + G++     LP+ +++H VFHVS
Sbjct: 1401 RCGEVAYKLALPSYSQVHPVFHVS 1424


>gb|AFJ66186.1| hypothetical protein 11M19.5 [Arabidopsis halleri]
          Length = 1557

 Score = 74.3 bits (181), Expect(2) = 1e-14
 Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
 Frame = -3

Query: 261  AQSRMKKIYDRHHTDREFVEGDWVYLKLQP*HQTSLSMR-KNLKLSPKYYGPFKVLKKIG 85
            AQ+RMK+  D H + REF  GD+VYLKLQP  Q SL  +    KLSP++YGPF+V  K+G
Sbjct: 1401 AQNRMKQYADSHRSQREFQVGDFVYLKLQPYRQQSLKTKGVPHKLSPRFYGPFRVTDKVG 1460

Query: 84   AVAYKL 67
             VAYKL
Sbjct: 1461 TVAYKL 1466



 Score = 29.6 bits (65), Expect(2) = 1e-14
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 92   KLGQLLTS*ELPTGTRIHLVFHVS 21
            K+G +    ELP GT IH VFHVS
Sbjct: 1458 KVGTVAYKLELPQGTAIHNVFHVS 1481


>gb|AAP54937.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1477

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 39/66 (59%), Positives = 52/66 (78%)
 Frame = -3

Query: 264  EAQSRMKKIYDRHHTDREFVEGDWVYLKLQP*HQTSLSMRKNLKLSPKYYGPFKVLKKIG 85
            +A+ +MK   D++ T REF EGDWVYLKLQP  Q+S++ R N KLS KY+GPF+VL+++G
Sbjct: 1339 QAEQQMKAYADKNRTFREFQEGDWVYLKLQPYVQSSVARRANHKLSFKYFGPFQVLQRVG 1398

Query: 84   AVAYKL 67
             VAYKL
Sbjct: 1399 LVAYKL 1404


>emb|CAD40278.2| OSJNBb0062H02.17 [Oryza sativa Japonica Group]
            gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
            Japonica Group]
          Length = 1629

 Score = 80.5 bits (197), Expect(2) = 4e-14
 Identities = 38/65 (58%), Positives = 49/65 (75%)
 Frame = -3

Query: 261  AQSRMKKIYDRHHTDREFVEGDWVYLKLQP*HQTSLSMRKNLKLSPKYYGPFKVLKKIGA 82
            AQ+RMK+  D+H ++R F  GDWVYLKLQP  Q S+  R N KLS ++YGPF+VL K+G 
Sbjct: 1425 AQTRMKQQADQHRSERSFAVGDWVYLKLQPFVQQSVVTRANRKLSFRFYGPFQVLDKVGT 1484

Query: 81   VAYKL 67
            VAY+L
Sbjct: 1485 VAYRL 1489



 Score = 21.9 bits (45), Expect(2) = 4e-14
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 92   KLGQLLTS*ELPTGTRIHLVFHVS 21
            K+G +    +LP+ + IH V HVS
Sbjct: 1481 KVGTVAYRLDLPSSSLIHPVVHVS 1504