BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042388
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...    55   8e-07
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    54   5e-06
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...    55   8e-06
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    41   8e-06

>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score = 55.1 bits (131), Expect(2) = 8e-07
 Identities = 20/48 (41%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
 Frame = -2

Query: 329 ILIYKWPSAVIK--EGIMRNFVWTGNPLTKRATTVSWKKWCKPVDEGG 192
           I +Y WP++++K  E  ++NF+W+G+   ++  TV+WKK C+P D+GG
Sbjct: 92  ITVYNWPTSLLKDLEKSIKNFIWSGDTSKRKLVTVAWKKLCRPFDQGG 139



 Score = 22.7 bits (47), Expect(2) = 8e-07
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 196 GVRFRRLKELNVVLLMKLVWRI 131
           G+R R L +LN    +KL W I
Sbjct: 139 GLRIRSLIQLNSASNLKLCWNI 160


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 54.3 bits (129), Expect(2) = 5e-06
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
 Frame = -2

Query: 329 ILIYKWPSAVIKE--GIMRNFVWTGNPLTKRATTVSWKKWCKPVDEGG 192
           I IY WPS ++KE     RNF+W+G+   ++  TV+WKK CKP  +GG
Sbjct: 457 ITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQGG 504



 Score = 20.8 bits (42), Expect(2) = 5e-06
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 196 GVRFRRLKELNVVLLMKLVWRIL 128
           G+  R L +LN    +KL W +L
Sbjct: 504 GLGIRSLSQLNAAGNLKLCWDML 526


>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
 Frame = -2

Query: 326 LIYKWPSAVIK--EGIMRNFVWTGNPLTKRATTVSWKKWCKPVDEGG 192
           ++Y+WPS+++K  E  +RNF+WTG+   K+  TV W   CKP+ EGG
Sbjct: 193 MMYRWPSSLLKSIEKAIRNFLWTGSVSYKKLVTVKWGHCCKPISEGG 239


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 41.2 bits (95), Expect(2) = 8e-06
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 320 YKWPSAVIKE--GIMRNFVWTGNPLTKRATTVSWKKWCKPVDEGG 192
           ++ PSA +KE   I   F+W+G  L +R   VSW   CKP  EGG
Sbjct: 234 FRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGG 278



 Score = 33.1 bits (74), Expect(2) = 8e-06
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -3

Query: 196 GVRFRRLKELNVVLLMKLVWRILTTEDEFVTFIWAK 89
           G+  R L E NVV ++KL+WR+ T+ D+ +   W+K
Sbjct: 278 GLGLRSLTEANVVSVLKLIWRV-TSNDDSLWVKWSK 312