BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042373
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55536.1| retrotransposon polyprotein [Rosa rugosa]              184   6e-45
gb|AFP55573.1| retrotransposon protein [Rosa rugosa]                  181   5e-44
emb|CAN61132.1| hypothetical protein VITISV_004062 [Vitis vinifera]   177   8e-43
emb|CAN66208.1| hypothetical protein VITISV_035070 [Vitis vinifera]   177   8e-43
emb|CAN77974.1| hypothetical protein VITISV_006175 [Vitis vinifera]   177   8e-43

>gb|AFP55536.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1508

 Score =  184 bits (467), Expect = 6e-45
 Identities = 88/119 (73%), Positives = 99/119 (83%)
 Frame = -1

Query: 360 LQRTQGDICGPINPPS*PFRYFMVLIDASTRWTYVSLLSSRNMVFARLLAQIIKLRVHFS 181
           LQR QGDICGPI P   PFRYFMVL+DASTRW++V L+S+RN  FA+LLAQIIKLR H  
Sbjct: 500 LQRIQGDICGPIQPSCGPFRYFMVLVDASTRWSHVMLVSTRNAAFAKLLAQIIKLRAHHP 559

Query: 180 DQSIKSIRLDNVAEFTSQVFDNYCSSIGIDVEHPVPHVHTHNGLAESLIKRLQLIARLL 4
           D  IKSIRLDN  EFTS+ FD+YC SIGIDVEHPVPHVHT NGLAE+ IKRLQ++AR L
Sbjct: 560 DHPIKSIRLDNAGEFTSKTFDDYCMSIGIDVEHPVPHVHTQNGLAEAAIKRLQMVARAL 618


>gb|AFP55573.1| retrotransposon protein [Rosa rugosa]
          Length = 2242

 Score =  181 bits (459), Expect = 5e-44
 Identities = 87/119 (73%), Positives = 98/119 (82%)
 Frame = -1

Query: 360 LQRTQGDICGPINPPS*PFRYFMVLIDASTRWTYVSLLSSRNMVFARLLAQIIKLRVHFS 181
           LQR Q DICGPI P   PFRYFMVL+DASTRW++V LLS+RN  FA+LLAQIIKLR H+ 
Sbjct: 557 LQRIQCDICGPIQPSCGPFRYFMVLVDASTRWSHVMLLSTRNAAFAKLLAQIIKLRAHYP 616

Query: 180 DQSIKSIRLDNVAEFTSQVFDNYCSSIGIDVEHPVPHVHTHNGLAESLIKRLQLIARLL 4
           D  IKSI LDN  EFTS+ FD+YC SIGIDVEHPVPHVHT NGLAE+ IKRLQ++AR L
Sbjct: 617 DHPIKSITLDNAGEFTSKTFDDYCMSIGIDVEHPVPHVHTQNGLAEAAIKRLQMVARAL 675


>emb|CAN61132.1| hypothetical protein VITISV_004062 [Vitis vinifera]
          Length = 536

 Score =  177 bits (449), Expect = 8e-43
 Identities = 85/119 (71%), Positives = 98/119 (82%)
 Frame = -1

Query: 360 LQRTQGDICGPINPPS*PFRYFMVLIDASTRWTYVSLLSSRNMVFARLLAQIIKLRVHFS 181
           L+R  GDICGPI+PP  PFRYFM+LIDASTRW++V LLS+RN+ FARLLAQII+LR  F 
Sbjct: 348 LERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFP 407

Query: 180 DQSIKSIRLDNVAEFTSQVFDNYCSSIGIDVEHPVPHVHTHNGLAESLIKRLQLIARLL 4
           D  IK+IRLDN  EFTSQ F +YC S+GI++EHPV H HT NGLAES IKRLQLIAR L
Sbjct: 408 DYPIKTIRLDNAGEFTSQTFIDYCMSVGINIEHPVAHTHTQNGLAESFIKRLQLIARPL 466


>emb|CAN66208.1| hypothetical protein VITISV_035070 [Vitis vinifera]
          Length = 1496

 Score =  177 bits (449), Expect = 8e-43
 Identities = 85/119 (71%), Positives = 98/119 (82%)
 Frame = -1

Query: 360 LQRTQGDICGPINPPS*PFRYFMVLIDASTRWTYVSLLSSRNMVFARLLAQIIKLRVHFS 181
           L+R  GDICGPI+PP  PFRYFM+LIDASTRW++V LLS+RN+ FARLLAQII+LR  F 
Sbjct: 529 LERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFP 588

Query: 180 DQSIKSIRLDNVAEFTSQVFDNYCSSIGIDVEHPVPHVHTHNGLAESLIKRLQLIARLL 4
           D  IK+IRLDN  EFTSQ F +YC S+GI++EHPV H HT NGLAES IKRLQLIAR L
Sbjct: 589 DYPIKTIRLDNAGEFTSQTFIDYCMSVGINIEHPVAHTHTQNGLAESFIKRLQLIARPL 647


>emb|CAN77974.1| hypothetical protein VITISV_006175 [Vitis vinifera]
          Length = 1501

 Score =  177 bits (449), Expect = 8e-43
 Identities = 85/119 (71%), Positives = 98/119 (82%)
 Frame = -1

Query: 360 LQRTQGDICGPINPPS*PFRYFMVLIDASTRWTYVSLLSSRNMVFARLLAQIIKLRVHFS 181
           L+R  GDICGPI+PP  PFRYFM+LIDASTRW++V LLS+RN+ FARLLAQII+LR  F 
Sbjct: 527 LERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFP 586

Query: 180 DQSIKSIRLDNVAEFTSQVFDNYCSSIGIDVEHPVPHVHTHNGLAESLIKRLQLIARLL 4
           D  IK+IRLDN  EFTSQ F +YC S+GI++EHPV H HT NGLAES IKRLQLIAR L
Sbjct: 587 DYPIKTIRLDNAGEFTSQTFIDYCMSVGINIEHPVAHTHTQNGLAESFIKRLQLIARPL 645