BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00042360
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   123   1e-26
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   111   5e-23
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   108   3e-22
emb|CAN60702.1| hypothetical protein VITISV_015869 [Vitis vinifera]    94   1e-17
emb|CAN70181.1| hypothetical protein VITISV_000006 [Vitis vinifera]    92   3e-17

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  123 bits (309), Expect = 1e-26
 Identities = 60/114 (52%), Positives = 81/114 (71%)
 Frame = -1

Query: 410 LASELVNDLQTLRHGGSIGIKLDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSN 231
           LASE +N L     GG++  K+DIS+AFDT++W FL  V +Q GF+E +  WI A+ QS 
Sbjct: 240 LASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSA 299

Query: 230 TMSIMINGGLQGNFSAGKGLKQGDPLSPLLFAFAEDCLSRSISRLVLEKKIQHM 69
            +SI ING  QG FS  +G++QGDPLSPLLF  AED LSRS+++LV + K++ M
Sbjct: 300 KLSICINGSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQM 353


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  111 bits (278), Expect = 5e-23
 Identities = 48/103 (46%), Positives = 77/103 (74%)
 Frame = -1

Query: 410 LASELVNDLQTLRHGGSIGIKLDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSN 231
           LASE +N L+  ++GG++ +K+DI++AFDT+DW+FL  V ++ GF+E+++ WI  + QS 
Sbjct: 566 LASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSA 625

Query: 230 TMSIMINGGLQGNFSAGKGLKQGDPLSPLLFAFAEDCLSRSIS 102
            +S+++NG   G F+   G++QGDPLSPLLF   E+ LSR++S
Sbjct: 626 RLSVLVNGKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLSRALS 668


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  108 bits (271), Expect = 3e-22
 Identities = 50/105 (47%), Positives = 72/105 (68%)
 Frame = -1

Query: 410 LASELVNDLQTLRHGGSIGIKLDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSN 231
           L SE +N L     GG++ +K+D+++AFDT++WDFL +V +  GFNE +  WI+ +  S+
Sbjct: 301 LTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSS 360

Query: 230 TMSIMINGGLQGNFSAGKGLKQGDPLSPLLFAFAEDCLSRSISRL 96
            M I +NG   G F+  +G++QGDPLSPLLF   E+ LSRSIS L
Sbjct: 361 KMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISIL 405


>emb|CAN60702.1| hypothetical protein VITISV_015869 [Vitis vinifera]
          Length = 3028

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 45/106 (42%), Positives = 68/106 (64%)
 Frame = -1

Query: 410  LASELVNDLQTLRHGGSIGIKLDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSN 231
            +A+E ++ L      G +  KLD+ +A+D ++WDFL  V + +GF E+WI WI     + 
Sbjct: 2419 IANEAIDSLLKRNESGVL-CKLDLEKAYDHINWDFLIFVLQSMGFGEKWIGWISWCISTA 2477

Query: 230  TMSIMINGGLQGNFSAGKGLKQGDPLSPLLFAFAEDCLSRSISRLV 93
            T S++ING  +G F++ +GL+QGDPLSP LF    + LSR I+R V
Sbjct: 2478 TFSVLINGTPEGYFNSSRGLRQGDPLSPYLFVIGMEALSRLINRAV 2523


>emb|CAN70181.1| hypothetical protein VITISV_000006 [Vitis vinifera]
          Length = 751

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 43/103 (41%), Positives = 66/103 (64%)
 Frame = -1

Query: 410 LASELVNDLQTLRHGGSIGIKLDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSN 231
           L + +  D +   +   + +K+DI +AFD ++WDFL  V  ++GF  RWI W++  + + 
Sbjct: 230 LIANVALDSRLKENTSGLLLKIDIEKAFDHVNWDFLMDVMSKMGFGHRWINWMKWCYSTA 289

Query: 230 TMSIMINGGLQGNFSAGKGLKQGDPLSPLLFAFAEDCLSRSIS 102
           T SI+ING   G F + +GL+QGDPLSP LF FA + LS+ +S
Sbjct: 290 TFSILINGSPSGFFRSSRGLRQGDPLSPYLFLFAMEALSQLLS 332